Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d10
(239 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 24 2.3
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni... 24 3.1
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 23 5.4
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po... 23 7.1
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 23 7.1
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc... 22 9.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 22 9.4
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 22 9.4
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 22 9.4
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 22 9.4
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 22 9.4
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 22 9.4
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 2.3
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 64 YRPWRLLLTLFQYWTTS 114
Y+ WR+LL F YW ++
Sbjct: 49 YQYWRILLWQFIYWNST 65
>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 157 ENHVDNISATSFYSQFGY 210
E VDN +A SFY + G+
Sbjct: 109 ETEVDNEAAMSFYERLGF 126
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 125 GGNGEVVQYWNSVSS 81
GGN VVQ W++ SS
Sbjct: 322 GGNDNVVQIWDARSS 336
>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 422
Score = 22.6 bits (46), Expect = 7.1
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 104 GRPHHYRL*VHSRGVVTAKTTSTTYQQQVFIHNSDIL 214
G H Y VH+ V T + +T Y + F S IL
Sbjct: 269 GDDHDYCEVVHNYQVDTREAATTEYNVKAFSMTSGIL 305
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 22.6 bits (46), Expect = 7.1
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 105 PVLEQRKQQPPG 70
P L +RKQ PPG
Sbjct: 82 PSLSERKQSPPG 93
>SPAC11E3.06 |map1||MADS-box transcription factor
Map1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 22.2 bits (45), Expect = 9.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +2
Query: 17 KLKPKKYESIFGPSVGI 67
K+ PK+ + IF PS GI
Sbjct: 242 KIFPKQGKRIFSPSTGI 258
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = +2
Query: 134 HSRGVVTAKTTSTTYQQQVFIHNSDI 211
HS+G+V A S + F+ N+ +
Sbjct: 269 HSQGIVVAAAVSASTDSASFMENAKV 294
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 143 RGYG-PRGGNGEVVQYWNSVSSSRQGR 66
RG G P+G G ++Y +S SSS Q R
Sbjct: 494 RGRGSPKGFRGSQLKYPSSSSSSFQRR 520
>SPCC63.04 |mok14||alpha-1,3-glucan synthase
Mok14|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1369
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -1
Query: 125 GGNGEVVQYWNSVSSSRQGRYQH*DQKYSHISLAST 18
GG GE+ +W SV SS +K ++L ST
Sbjct: 658 GGLGEMPGWWYSVESSSTAYLLKQLEKSCTLALKST 693
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 204 RIYYKWYKTKKK 239
R Y W+K+KKK
Sbjct: 117 RFYKNWFKSKKK 128
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 22.2 bits (45), Expect = 9.4
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 204 RIYYKWYKTKKK 239
R Y W+K+KKK
Sbjct: 117 RFYKNWFKSKKK 128
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 22.2 bits (45), Expect = 9.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -1
Query: 122 GNGEVVQYWNSVSSSRQGRYQH*D 51
G+ +VQYW+S++ S QH D
Sbjct: 940 GDHLIVQYWSSIALS-TAHVQHGD 962
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,344
Number of Sequences: 5004
Number of extensions: 14208
Number of successful extensions: 32
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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