Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d10
(239 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0586 + 15782645-15782721,15782781-15783405 29 0.69
11_03_0186 + 11332864-11333697 28 0.92
04_03_0273 - 13742351-13743357,13743617-13743731 28 1.2
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 27 2.1
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 27 2.8
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 26 4.9
09_02_0018 + 3016137-3016186,3016529-3016776,3018717-3018811,302... 26 4.9
06_01_0575 + 4062084-4063135,4063518-4063620 25 6.5
07_03_0734 + 21067747-21068569,21069678-21069812,21069967-210701... 25 8.5
02_01_0158 - 1103461-1104186 25 8.5
>05_03_0586 + 15782645-15782721,15782781-15783405
Length = 233
Score = 28.7 bits (61), Expect = 0.69
Identities = 17/41 (41%), Positives = 17/41 (41%)
Frame = +2
Query: 50 GPSVGIGPGGCCLRCSSTGRPHHYRL*VHSRGVVTAKTTST 172
G G P GCC S G P RL SRGV K T
Sbjct: 167 GQRRGFLPTGCCSLLLSIGAPSLLRLAYSSRGVPHVKERDT 207
>11_03_0186 + 11332864-11333697
Length = 277
Score = 28.3 bits (60), Expect = 0.92
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = +2
Query: 62 GIGPGGCCLRCSSTGRPHHYRL*VHSRGVVTAKTTST 172
G P GCC S G P RL SRGV K T
Sbjct: 153 GFLPTGCCSLLPSIGDPTPLRLAYFSRGVPHVKERDT 189
>04_03_0273 - 13742351-13743357,13743617-13743731
Length = 373
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 38 ESIFGPSVGIGPGGCCLRCSSTGRPHHYRL*VHSRGVV 151
+++FG + G GCC SSTG ++L S+ V+
Sbjct: 191 QAVFGDAAGAAVVGCCRHPSSTGERPVFQLVRASQDVI 228
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 140 GYGPRGGNGEVVQYWNSVSSSRQG 69
GYGP+GG+G Y S S S +G
Sbjct: 448 GYGPQGGSGFSESYGYSGSPSHRG 471
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 26.6 bits (56), Expect = 2.8
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = -3
Query: 102 VLEQRKQQPPGPIPTLGPKIL 40
+++ RK Q GPIPT+ P+IL
Sbjct: 284 IVDLRKIQYHGPIPTMEPQIL 304
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 158 SRLQRRGYGPRGGNG 114
SR +RR YG RGG G
Sbjct: 373 SRYRRRSYGTRGGGG 387
>09_02_0018 +
3016137-3016186,3016529-3016776,3018717-3018811,
3020025-3020330,3021288-3021336,3021436-3021637,
3023364-3023532,3023605-3023634,3023742-3023807,
3025313-3025378,3029404-3029464,3029592-3029719,
3030716-3030757,3031074-3031190,3031280-3031339
Length = 562
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = -2
Query: 211 YIRIVNKNLLLICCRRGFRGYNAAAMDLEAVMVRS 107
Y+RIVN L L+C +G R + ++E +++R+
Sbjct: 24 YLRIVNNRLQLLC--QGTRTVDEYYKEMELLLIRA 56
>06_01_0575 + 4062084-4063135,4063518-4063620
Length = 384
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 182 ADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQG 69
A ML+ S R+ + GG G + W S S R+G
Sbjct: 251 AGMLALRQSSFNRKHHHHGGGGGAAAESWCSSDSDRRG 288
>07_03_0734 +
21067747-21068569,21069678-21069812,21069967-21070100,
21070182-21070449,21070472-21070709,21070787-21070937,
21071040-21071387
Length = 698
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 232 FVLYHL*YIRIVNKNLL 182
F++Y L Y+R N+NLL
Sbjct: 110 FIVYDLCYLRFTNRNLL 126
>02_01_0158 - 1103461-1104186
Length = 241
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +2
Query: 56 SVGIGPGGCCLRCSSTG 106
S G GPGG C +C +G
Sbjct: 117 SGGGGPGGGCFKCGESG 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,002,757
Number of Sequences: 37544
Number of extensions: 102182
Number of successful extensions: 376
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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