Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24d10
         (239 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    26   4.1  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    26   4.1  
X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.     25   7.2  
AF016437-2|AAB65887.1|  554|Caenorhabditis elegans Hypothetical ...    25   7.2  
AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical ...    25   7.2  
U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical p...    25   9.5  
U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 134 GPRGGNGEVVQYWNSVSSSRQGRYQH*DQKYSHISL 27
           G +  NG+VV+Y       R+ +Y+  ++KY  + +
Sbjct: 404 GSKNANGDVVKYETYKMEKRKIKYEGGNKKYEQVHI 439


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 134 GPRGGNGEVVQYWNSVSSSRQGRYQH*DQKYSHISL 27
           G +  NG+VV+Y       R+ +Y+  ++KY  + +
Sbjct: 404 GSKNANGDVVKYETYKMEKRKIKYEGGNKKYEQVHI 439


>X66104-1|CAA46899.1|  557|Caenorhabditis elegans esterase protein.
          Length = 557

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 206 PNCE*KLVADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQGRY 63
           P  E + V +  +T FS   +  YG   G G   + W   S +R  R+
Sbjct: 464 PTEEDRKVMETTTTLFSNFAK--YGNPNGKGATAEIWEKYSLNRPERH 509


>AF016437-2|AAB65887.1|  554|Caenorhabditis elegans Hypothetical
           protein F13H6.3 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -1

Query: 206 PNCE*KLVADMLSTWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQGRY 63
           P  E + V +  +T FS   +  YG   G G   + W   S +R  R+
Sbjct: 464 PTEEDRKVMETTTTLFSNFAK--YGNPNGKGATAEIWEKYSLNRPERH 509


>AC024775-1|AAK68455.1|  456|Caenorhabditis elegans Hypothetical
           protein Y41D4A.5 protein.
          Length = 456

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 102 VLEQRKQQPPGPIPTLGPKI 43
           + EQ+ + PP P+PT  P +
Sbjct: 18  IQEQKPKSPPPPLPTSNPVV 37


>U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical
           protein C50E3.13 protein.
          Length = 384

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 170 STWFSRLQRRGYGPRGGNGEVVQYWNSVSSSRQ 72
           S W  +  RR     GG+G     WN+ S+S Q
Sbjct: 347 SNWRPKRPRRD-DDEGGSGSSASMWNAPSTSSQ 378


>U40420-2|AAK84526.3|  245|Caenorhabditis elegans Hypothetical
           protein F40F4.7 protein.
          Length = 245

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 166 VDNISATSFYSQFGYTTNGI 225
           V+N +A  FY + G+T +GI
Sbjct: 205 VNNKNAVQFYEKHGFTNDGI 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,129,651
Number of Sequences: 27780
Number of extensions: 86282
Number of successful extensions: 244
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)