Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24d08
         (378 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0368 + 17005231-17005437,17005707-17005963,17006061-170061...    30   0.69 
11_08_0057 + 28101412-28102290                                         27   4.9  
06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-63...    27   4.9  

>09_04_0368 +
           17005231-17005437,17005707-17005963,17006061-17006115,
           17006196-17006276,17006357-17006453,17006560-17006627,
           17006788-17006886,17007008-17007049,17007124-17007263,
           17007882-17008018,17008275-17008444
          Length = 450

 Score = 29.9 bits (64), Expect = 0.69
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 355 LQTNIIQFSNILRYIIFIIVQGKLMTW 275
           L TNI+   NIL Y+  I  QG+L+ W
Sbjct: 144 LWTNILLAVNILAYVAQITTQGRLLIW 170


>11_08_0057 + 28101412-28102290
          Length = 292

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 340 IQFSNILRYIIFIIVQGKLMTWEKRY*FSTGY 245
           + FS++L +I+     G LM W++ Y   TGY
Sbjct: 255 VLFSDVLSHIVEKPNYGGLMIWDRYYDKKTGY 286


>06_01_0078 - 628946-629524,629620-629684,629814-629935,630042-630129,
            630508-630819,630908-632189,632296-632784
          Length = 978

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 51   ILVIGV*CRFLKPDSTLIRTTVQIFTHTPR 140
            IL     CR LKPDS ++     ++ H+ R
Sbjct: 911  ILFFETACRLLKPDSFILSAAFHLYEHSGR 940


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,232,837
Number of Sequences: 37544
Number of extensions: 139368
Number of successful extensions: 175
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)