Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24d01
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    29   0.84 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.5  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.6  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    27   3.4  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   4.5  
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz...    26   5.9  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   7.9  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   7.9  

>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -3

Query: 246 LXGSVINNPFHSEFSSTE-RPREAENISFKRLSKVLLEPEKLNDSGLW---RMLSSPEAL 79
           L G  ++NPF S+F + E R  EAE I  ++    +   ++  ++ +W   RM++S  + 
Sbjct: 298 LLGDEVHNPF-SDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSK 356

Query: 78  IPIIE 64
            P +E
Sbjct: 357 APGLE 361


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +2

Query: 125 SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 241
           SF  S    +SLL E+FSA LG    +++ WN LL   P
Sbjct: 32  SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 239  DQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYG 105
            DQL++     + ++    E Q    LK+SR  Y+N+ +L T  +G
Sbjct: 1126 DQLNLSVQRSALIKAAFPESQSNANLKNSRGIYYNEHDLVTDIFG 1170


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = +2

Query: 107 HSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPXNTPEAVVEVYITGI 286
           +  +S S +GS +  E     +F    GL  E   EWNG+         E+  E  +   
Sbjct: 321 YQEDSASEAGSIED-EQATDNVFGFGKGLEQENEEEWNGI----NEEAEESEDEESVNSD 375

Query: 287 SSLGSSADFKSKKYPLV 337
           +S       K ++ PLV
Sbjct: 376 TSFVDDEQLKVEEQPLV 392


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 116 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSE 214
           E L  SGS K FE+ +   F+  L + V +N E
Sbjct: 119 ELLKKSGSYKGFEAFVNRTFAVLLRIVVNDNEE 151


>SPBC56F2.07c |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 89  GELSILHSPESLSFSGSSK-TFESLLKEIFSASLGLSVEENSE 214
           G + +  SP +++ SGS   + E++  EIF  + GLS +  +E
Sbjct: 132 GMIVMGESPMNMAKSGSKNLSSENMATEIFEINSGLSAQSGTE 174


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
 Frame = +2

Query: 479 LDIPKVKKQSLQHLK-SSVEEDF-QFLXE----LAALKAVTEXVESGAISAXNIIDFYNL 640
           L+I K KK      K ++V  D  Q+  E    +A+L    +  E    +  N  +F+NL
Sbjct: 546 LEIEKRKKYETNEAKITTVATDLSQYYRESKEYIASLYEKLDRTERN--NKENENNFWNL 603

Query: 641 XINSLHALRDFHG 679
             N L  LR FHG
Sbjct: 604 KFNLLTMLRSFHG 616


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 98  SILHSPE-SLSFSGSSKTFESLLKEIFSASLGLSVEENSEW 217
           S + SPE +L  S S+ TF+SL KE+      L+  ++ E+
Sbjct: 93  SNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDDDEF 133


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,544
Number of Sequences: 5004
Number of extensions: 48354
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)