Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d01
(692 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 29 2.6
11_01_0711 - 5839385-5840311,5840815-5841111 29 3.5
11_04_0289 - 15804766-15804977,15805742-15805862,15806541-158067... 29 4.6
09_04_0076 + 14350020-14350164,14351020-14351129,14351436-143516... 29 4.6
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678... 29 4.6
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 4.6
10_08_0914 + 21535519-21535797,21535961-21536339,21536425-215365... 28 6.1
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 28 6.1
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 28 6.1
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +2
Query: 500 KQSLQHLKSSVEEDFQFLXELAALKAVTEXVESGAISAXNIIDFYNLXINSLHAL 664
K L HL+S EED Q L E L +E+ A+ A N+ + + +H +
Sbjct: 157 KSDLNHLRSVPEEDGQALAEKEGL----SFLETSALEALNVEKAFQTILKDIHQI 207
>11_01_0711 - 5839385-5840311,5840815-5841111
Length = 407
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/63 (28%), Positives = 27/63 (42%)
Frame = +2
Query: 95 LSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPXNTPEAVVEVY 274
L+I H ++ + KT LKEI + L E+S + +TD T V E
Sbjct: 108 LTIAHK---ITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEAL 164
Query: 275 ITG 283
+ G
Sbjct: 165 VVG 167
>11_04_0289 -
15804766-15804977,15805742-15805862,15806541-15806776,
15807639-15807766,15807873-15807910,15808041-15808129,
15808669-15808774,15811395-15811580
Length = 371
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -1
Query: 206 SLQRKGQEKQ--KIFLLKDSRKFYWNQRNLTTQDYGGCLVRQRH*YXXXXXXXKPIQIP 36
S++R EK + L +RK W+ R+L+T+ +QRH Y Q+P
Sbjct: 128 SVRRNQAEKHCSRASSLVSNRKKIWDSRSLSTRGLAPVTAQQRHHYITSILARMDYQVP 186
>09_04_0076 +
14350020-14350164,14351020-14351129,14351436-14351601,
14351740-14351840,14351960-14352032,14352111-14352252,
14353239-14353399,14354017-14354129,14354226-14354325,
14354580-14354676,14354798-14354849,14355074-14355175,
14355256-14355402,14355485-14355656,14355752-14355991,
14356565-14356621,14356853-14356942,14357089-14357284,
14358117-14358228,14358305-14358459,14359155-14360580,
14360663-14360857,14361214-14361684
Length = 1540
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/51 (43%), Positives = 28/51 (54%)
Frame = +2
Query: 146 TFESLLKEIFSASLGLSVEENSEWNGLLITDPXNTPEAVVEVYITGISSLG 298
TFES + IFSA LG S+ NS+ + D PEA++ T IS LG
Sbjct: 627 TFESEVDRIFSAPLG-SLANNSKRSCCRNID---NPEALIFSSATAISMLG 673
>05_05_0199 -
23165776-23166259,23166356-23167128,23167633-23167869,
23167973-23168197
Length = 572
Score = 28.7 bits (61), Expect = 4.6
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 83 ASGELSILHS-PESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDPXNTPEA 259
A G L +++S P SLS + S +F SLL S G S+ L+T P + P +
Sbjct: 4 APGSLPLVNSRPVSLSLAASRSSFSSLL----SGGAGSSLN--------LMTPPSSLPPS 51
Query: 260 VVEVYITGISSLG 298
Y G+SS G
Sbjct: 52 SPSSYFGGVSSSG 64
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 308 DFKSKKYPLVVXEYEPDTFDVLKHXIXQRF 397
DF YP+ EY P FDV H +RF
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF 340
>10_08_0914 +
21535519-21535797,21535961-21536339,21536425-21536568,
21536681-21536730,21536820-21536877,21536979-21537208
Length = 379
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +2
Query: 59 ISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWN 220
I S +G+ +SG+L L + + + G++ + + +E+ S + L E+ W+
Sbjct: 198 IQSAVGVRSSGDLMTLTAAAATALRGAATMKQRVQREMRSNASVLPYEKGHSWS 251
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = -3
Query: 201 STERPREAENISFKRLSKVLLEPEKLNDSGLWRMLSSPEALIPIIEEIKKT 49
S E P A N +F L LLE KL+ GLW+ + + ++++ KT
Sbjct: 100 SVESP--APNHTFPSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKT 148
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 489 GISKSPNTFEYDKS*SESLKLIFTSLLPPXVKR*XIXCFNTSK 361
G+SK PN Y S S K + P + I C+N +
Sbjct: 93 GVSKDPNPCSYSSSSPSSCKPSVVKFISPSARLQAIQCYNLQR 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,729
Number of Sequences: 37544
Number of extensions: 265068
Number of successful extensions: 706
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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