Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24d01
(692 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical pr... 29 3.2
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical p... 27 9.6
Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 27 9.6
U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-... 27 9.6
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 27 9.6
U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein. 27 9.6
U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein. 27 9.6
>Z69884-4|CAA93751.2| 913|Caenorhabditis elegans Hypothetical
protein F31F6.5 protein.
Length = 913
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 506 TVF*LLEYLNHLTHLNMTKADQSHL 432
TVF LLEYLN+L+ LN D L
Sbjct: 639 TVFFLLEYLNYLSELNAEVEDTERL 663
>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
F44E2.4 protein.
Length = 1283
Score = 28.3 bits (60), Expect = 5.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -3
Query: 375 FNTSKVSGSYSXTTKGYFLDLKSAELPRLDMPVM*TSTTASGVLXGSVINNPFHSEFSST 196
FN S + S T +D+ E R PV+ T + V + +NN +E +T
Sbjct: 1200 FNASCILESPEPTKDSTSIDVNEVEPSRDQKPVVVTKDETTPVSITTAMNNDI-TESETT 1258
Query: 195 ERPREAENISFKRLSKVLL 139
+ P ++SF + L+
Sbjct: 1259 QSPPVQSSVSFHIILAALI 1277
>Z73971-10|CAA98251.1| 838|Caenorhabditis elegans Hypothetical
protein C50H2.3 protein.
Length = 838
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 31 NYGICMGFLNLFNNRYQCLWRTKH 102
+YG CMG N F+++ QC+ + K+
Sbjct: 65 HYGGCMGTKNRFSSKQQCVKQCKY 88
>Z69661-6|CAA93492.4| 299|Caenorhabditis elegans Hypothetical
protein F48F7.2 protein.
Length = 299
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -1
Query: 269 LRQLLQEC*XDQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDY 108
LR+L+++ D L ++S +++ ++ Q + LLKD+ N N T QDY
Sbjct: 89 LRKLVRQAEDDFLEFTKQVQSVTEKRMRQNQ-LELLKDNLNKLINLFNETHQDY 141
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.6
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = -3
Query: 594 STFSVTAFKAASSXRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 427
S+ S TA SS +SS+T + T + + K+ TF YD S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571
Query: 426 IFTSLLPPXVKR*XIXCFNTSKVSGSYSXTTKGYFLDLKSAELPRL 289
S L + I C TS S +Y TTK KS +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.5 bits (58), Expect = 9.6
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Frame = -3
Query: 594 STFSVTAFKAASSXRNWKSSSTEDFKCCKDCFLT----FGISKSPNTFEYDKS*SESLKL 427
S+ S TA SS +SS+T + T + + K+ TF YD S S+ L
Sbjct: 516 SSVSSTASSTQSSTSTQQSSTTTKSETTTSSDGTNPDFYFVEKATTTF-YD---STSVNL 571
Query: 426 IFTSLLPPXVKR*XIXCFNTSKVSGSYSXTTKGYFLDLKSAELPRL 289
S L + I C TS S +Y TTK KS +PRL
Sbjct: 572 TLNSGLGIIGYQTSIEC--TSPTSSNYVSTTKDGACFTKSVSMPRL 615
>U40410-3|AAL27230.1| 1169|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform b protein.
Length = 1169
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 185 LGLSVEENSEWNGLLITDPXNTPEAVVEVYITGISSLG 298
+G++V N E +GLL DP A + G+ ++G
Sbjct: 19 VGINVPCNKELDGLLTADPDGDERAFMSCQGVGVGTIG 56
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 185 LGLSVEENSEWNGLLITDPXNTPEAVVEVYITGISSLG 298
+G++V N E +GLL DP A + G+ ++G
Sbjct: 19 VGINVPCNKELDGLLTADPDGDERAFMSCQGVGVGTIG 56
>U33934-1|AAA96507.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 31 NYGICMGFLNLFNNRYQCLWRTKH 102
+YG CMG N F+++ QC+ + K+
Sbjct: 65 HYGGCMGTKNRFSSKQQCVKQCKY 88
>U33933-1|AAA96506.1| 838|Caenorhabditis elegans MEC-9L protein.
Length = 838
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 31 NYGICMGFLNLFNNRYQCLWRTKH 102
+YG CMG N F+++ QC+ + K+
Sbjct: 65 HYGGCMGTKNRFSSKQQCVKQCKY 88
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,049
Number of Sequences: 27780
Number of extensions: 254457
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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