Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c23
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.1  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    26   2.6  
SPBC1604.10 |srb7|med21|mediator complex subunit Srb7 |Schizosac...    25   6.0  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    25   6.0  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    25   6.0  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   7.9  

>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 128 YWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHII 232
           +W EI      +G  +  NFQ K+ + SG+Q ++I
Sbjct: 229 HWIEINAGFKEVGDELSENFQRKQEILSGLQNNVI 263


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 245 WVSILSYVQHKRNEYLAEKDAVYRHYI 325
           W+S L Y+  + NE+LA KD +   Y+
Sbjct: 200 WISKLPYLAMQTNEHLAVKDELDSLYL 226


>SPBC1604.10 |srb7|med21|mediator complex subunit Srb7
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 317 HYIELHPDDFPVPERKKIGD 376
           HY+  H D  P+P ++K+ D
Sbjct: 24  HYLSSHHDFVPLPGQEKVSD 43


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +2

Query: 77  ELLKLGDEGRQKPFLNKYWPEIIGVTFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVS 253
           +LLK   + R  PF+  Y+  I+GV  GI     L  +   P FSGI   ++    W++
Sbjct: 335 DLLKSCLDLRVWPFILMYFG-IVGVGNGIFNYCTLIIEEINPSFSGIDISLLNAPIWLA 392


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 218 QKHIIATGGWVSILSYVQHKRNEYLAEKDAVYRHYIELHPDDF 346
           +K I ATG W + L    H R  +LA    V   YI+L P+++
Sbjct: 199 EKLIFATGAWTASLLPNDHTR--FLATGQPV--AYIKLTPEEY 237


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 152 TFGIGTGMFLNFQTKRPVFSGIQKHIIATGGWVSILSYVQ 271
           TF IG    LN   K  VF+ ++K    T  W+S   Y+Q
Sbjct: 552 TFSIG----LNMPAKTVVFTNVRKFDGKTFRWISGGEYIQ 587


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,977,625
Number of Sequences: 5004
Number of extensions: 40695
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)