Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c18
         (634 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442151-1|AAL50053.1|  361|Homo sapiens viperin protein.              38   0.039
AC017076-1|AAY14802.1|  361|Homo sapiens unknown protein.              38   0.039
BC017969-1|AAH17969.1|  361|Homo sapiens radical S-adenosyl meth...    36   0.16 

>AF442151-1|AAL50053.1|  361|Homo sapiens viperin protein.
          Length = 361

 Score = 37.5 bits (83), Expect = 0.039
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +1

Query: 472 LSIFRFVLSIIFNVLVPRACWVRSPFWNL*RKTR 573
           LS+FR  LS ++  LVP  CW+R+ FW L  K R
Sbjct: 14  LSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRR 47


>AC017076-1|AAY14802.1|  361|Homo sapiens unknown protein.
          Length = 361

 Score = 37.5 bits (83), Expect = 0.039
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +1

Query: 472 LSIFRFVLSIIFNVLVPRACWVRSPFWNL*RKTR 573
           LS+FR  LS ++  LVP  CW+R+ FW L  K R
Sbjct: 14  LSVFRQPLSSLWRSLVPLFCWLRATFWLLATKRR 47


>BC017969-1|AAH17969.1|  361|Homo sapiens radical S-adenosyl
           methionine domain containing 2 protein.
          Length = 361

 Score = 35.5 bits (78), Expect = 0.16
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +1

Query: 472 LSIFRFVLSIIFNVLVPRACWVRSPFW 552
           LS+FR  LS ++  LVP  CW+R+ FW
Sbjct: 14  LSVFRQPLSSLWRSLVPLFCWLRATFW 40


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,937,289
Number of Sequences: 237096
Number of extensions: 1021719
Number of successful extensions: 1585
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)