Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c17
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ...    28   1.2  
SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subuni...    25   8.4  

>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 216 PAPMARKYTQTHLKNGTRRPP-TP 148
           PAP+A ++ Q H  NGT+  P TP
Sbjct: 409 PAPLATRFLQEHSLNGTKSAPITP 432


>SPBC1677.02 |dpm3||dolichol-phosphate mannosyltransferase subunit
           3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 168 TRRPPTPTLFTNAVGEIISPSRRL*KLTAHDKPE 67
           T RP TP LF  A G  +  +      T +DKPE
Sbjct: 32  TLRPYTPYLFILAFGSYLGITLLYNVATTNDKPE 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,978,129
Number of Sequences: 5004
Number of extensions: 58997
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)