Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c17
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0218 + 13178709-13179034,13180116-13180152                       31   0.94 
10_01_0186 - 2077298-2078731                                           30   1.6  
01_01_0198 + 1718374-1718875,1719591-1719604                           30   1.6  
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622     30   2.2  
08_02_1050 + 23949828-23949981,23950083-23950534,23951599-239516...    29   5.0  
01_01_0971 + 7669209-7669446,7671259-7671446                           29   5.0  
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    28   6.6  
02_02_0473 - 10727908-10728052,10728367-10728440,10728660-107288...    28   8.7  
01_06_1106 + 34563368-34563679                                         28   8.7  

>06_02_0218 + 13178709-13179034,13180116-13180152
          Length = 120

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = +1

Query: 202 GHGR----GWERSILDRRGNKMRSDTLPATRRGSTPWIL-AL*ERLVRATDRGRSGSISP 366
           GHGR     W+++   RRG+  RSD  PA R  + P    A   R   A   GR GS+  
Sbjct: 47  GHGRLAGEAWQKTAFGRRGSDGRSDRRPARRVEARPVAAEAGTARGGAAGGGGRLGSMRH 106

Query: 367 GR 372
           GR
Sbjct: 107 GR 108


>10_01_0186 - 2077298-2078731
          Length = 477

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 398 SAAAKPGRHRPGLIEPDRPRSVARTNLSHKARIHGVEPR 282
           S  +K G H   +IE + P  + R   S++ R+H + PR
Sbjct: 368 SNLSKYGEHPKDIIEKEHPIDITRFGSSYRTRLHLMPPR 406


>01_01_0198 + 1718374-1718875,1719591-1719604
          Length = 171

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 312 MRKVGTRDGSRPVWLYQ--PWAMPSWFGRSTSSRAWR 416
           +R  GT DG RP W  +   W  P+W  R    R WR
Sbjct: 74  LRARGTADGGRPDWRERRTRWRRPAW--RERRGRRWR 108


>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
          Length = 313

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = +3

Query: 324 GTRDGSRPVWLYQP--WAMPSWFGRSTSSRAWR 416
           G  DG RP W  +P  W  P+W  R    R WR
Sbjct: 233 GATDGGRPDWRERPVRWRRPAW--RERRGRWWR 263


>08_02_1050 +
           23949828-23949981,23950083-23950534,23951599-23951631,
           23952069-23952179,23953175-23953348
          Length = 307

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 219 PPAPMARKYTQTHLKNGTRRPPTPT 145
           PPAP+A   ++ HL+   R PP+P+
Sbjct: 3   PPAPLAPLRSRAHLRLHCRLPPSPS 27


>01_01_0971 + 7669209-7669446,7671259-7671446
          Length = 141

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 398 SAAAKPGRHRPGLIEPDRPRSVA 330
           SA   PGR RPG+  P RP  +A
Sbjct: 38  SATPVPGRARPGVAAPSRPPRIA 60


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 122 KSSLPPDDYRN*LRTIS--RRHDIILDITRSICTE 24
           KS + P D+ N   T+   R HD++LD+ R I TE
Sbjct: 465 KSMIQPMDFNNYEGTLDGCRIHDMVLDLIRIISTE 499


>02_02_0473 - 10727908-10728052,10728367-10728440,10728660-10728818,
            10729606-10729774,10730216-10730355,10730469-10730879,
            10731055-10731334,10731508-10731571,10731995-10733281,
            10733363-10733822,10733988-10734356
          Length = 1185

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 378  SWFGRSTSSRAWRPLRLPTYPT 443
            SW G +T+SRA+R  R  TY T
Sbjct: 979  SWSGTTTASRAYRRSRTSTYGT 1000


>01_06_1106 + 34563368-34563679
          Length = 103

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 288 TTTSSRQSIGAHFVATPIKDGSLPPAPMARKYTQ-THLKNGTRRPP 154
           T TS+   +GA     P + G +PP+  A    +  H  N  RRPP
Sbjct: 16  TPTSTADRLGAASSQAPPRPGRVPPSASAPPPAELRHGPNRCRRPP 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,613,031
Number of Sequences: 37544
Number of extensions: 477830
Number of successful extensions: 1284
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)