Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c17
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical pr...    38   0.006
Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL021504-2|CAA16429.2|  279|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z46381-9|CAI58660.1|  807|Caenorhabditis elegans Hypothetical
           protein M01F1.4b protein.
          Length = 807

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 YFACYSSWFYTMDPCLMRKVGTRDGSRPVWLY 359
           YF CY++W Y  +P  + K   R  S P+W+Y
Sbjct: 170 YFCCYAAWIYVQNPKEINKKLARSFSLPIWIY 201


>Z46381-8|CAA86517.2|  808|Caenorhabditis elegans Hypothetical
           protein M01F1.4a protein.
          Length = 808

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 264 YFACYSSWFYTMDPCLMRKVGTRDGSRPVWLY 359
           YF CY++W Y  +P  + K   R  S P+W+Y
Sbjct: 171 YFCCYAAWIYVQNPKEINKKLARSFSLPIWIY 202


>Z75549-1|CAA99917.1|  424|Caenorhabditis elegans Hypothetical
           protein T19C4.1 protein.
          Length = 424

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = -2

Query: 243 TPIKDGSLPPAPMARKYTQTHLKNGTRRPPTPTLFTNAVGEIISPSRRL*KLTAHDKPET 64
           TP K  +L   P   K T+  + +GT RPP  + F  A  E   PS          +PE+
Sbjct: 60  TPFKAATLNRTP---KPTRDSVHSGTLRPPKMSPFVYATDEFSPPSAPATPKIGRTRPES 116


>AL021504-2|CAA16429.2|  279|Caenorhabditis elegans Hypothetical
           protein Y61B8B.2 protein.
          Length = 279

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 250 CCHADQGWIAPTRAHGQEIHADTFEEWDETTAHPHPFYQCSRGNH 116
           CC   +  I  TR H    H +T  EW       HP+ +C  G +
Sbjct: 181 CCLISKSCIECTRVHIHSPHVNTLGEW-------HPWARCGDGKY 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,941,785
Number of Sequences: 27780
Number of extensions: 352000
Number of successful extensions: 884
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)