Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24c08
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.018
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 34 0.024
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 31 0.13
SPCC1223.10c |eaf1||RNA polymerase II transcription elongation f... 31 0.23
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.23
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 30 0.30
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 30 0.40
SPAC3A12.13c |||translation initiation factor eIF3 complex subun... 30 0.40
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 29 0.52
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 29 0.52
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.69
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c... 28 1.2
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 28 1.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 28 1.2
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 28 1.2
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 28 1.2
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 28 1.6
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 27 2.1
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 27 2.1
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 27 2.1
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.1
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 27 2.8
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 2.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.8
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 27 2.8
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 27 3.7
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 27 3.7
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 3.7
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 3.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 4.9
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 26 6.4
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 6.4
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 8.5
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 8.5
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.5
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 34.3 bits (75), Expect = 0.018
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Frame = +3
Query: 345 LKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEET 524
+K ++ + +E +S+SE E EE+ + +EE +K + S E SS++E
Sbjct: 128 VKTEEKKESSSESSSSSESE-------EEEEAVVKIEE--KKESSSDSSSESSSSESESE 178
Query: 525 SPINNSEDQNHT---TQVEDTNVSQSIGHIEPINE-QDEHGE-EAISPSLSESSRATRWE 689
S + SE++ T+ + S+S E ++ E G+ ++ S S SESS +
Sbjct: 179 SSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKK 238
Query: 690 ALADIAA-ELPASLT 731
A+ A+ E PA +T
Sbjct: 239 RKAEPASEERPAKIT 253
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 33.9 bits (74), Expect = 0.024
Identities = 28/103 (27%), Positives = 55/103 (53%), Gaps = 10/103 (9%)
Frame = +3
Query: 450 LEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDE 629
+EE ++++E + + ++ +N+ETS N +E + DT + I E + ++E
Sbjct: 208 IEEENDEILEDSKESKDENEENKETSTTNVAETDAPEEETVDT--VEEIADEEKHSVKEE 265
Query: 630 HGE-------EAISPSLSESSRATR---WEALADIAAELPASL 728
GE ++ S+S ++R+TR EA A+ A+LPA++
Sbjct: 266 SGEASPQSSQQSTITSISTTTRSTRKAKREAAAEDKADLPAAV 308
Score = 30.7 bits (66), Expect = 0.23
Identities = 29/110 (26%), Positives = 47/110 (42%)
Frame = +3
Query: 345 LKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEET 524
L++ K +D E N + A A EE+ + T+EE+ + E HS + +S E
Sbjct: 216 LEDSKESKDENEENKETSTTNVAETDAPEEETVDTVEEIAD---EEKHSVKEESG---EA 269
Query: 525 SPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESSR 674
SP S Q+ T + T S E E A++P S++ +
Sbjct: 270 SP--QSSQQSTITSISTTTRSTRKAKREAAAEDKADLPAAVAPKPSKTRK 317
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +3
Query: 402 ELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSP-INNSEDQNHTTQVEDT 578
EL + ++E D S L E+I +V E HS Q +P +N ++ + V
Sbjct: 407 ELLRKLCSSENDFCSLLVEIITEVFEQGHSQNQTEEQGNSNAPELNKNDYEGEEITVSQK 466
Query: 579 NVSQSIGHIEPINEQDEHGEEAISPSLSE 665
+ S S+ E +NE + + + +E
Sbjct: 467 SPSPSLPPNE-LNEPEPDDMDGYKEAFNE 494
>SPCC1223.10c |eaf1||RNA polymerase II transcription elongation
factor SpEAF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 251
Score = 30.7 bits (66), Expect = 0.23
Identities = 29/145 (20%), Positives = 62/145 (42%)
Frame = +3
Query: 264 NVLPQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKI 443
N +P+ + L K+ + P D + + E + + + ++I N + K
Sbjct: 30 NFIPESVDPSRRGVLEKAQEAYRLRLPSTFDDDRPHIFEGSCQRARNVDCVLIFNAKTKT 89
Query: 444 STLEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQ 623
TLE I+++ LN +++ + +T P N +++ E + SQS +
Sbjct: 90 FTLEH-IDEIARLN---ALRNPKVSKTVPSNAITQSDNSQISESKSTSQSAVTTNSTRRK 145
Query: 624 DEHGEEAISPSLSESSRATRWEALA 698
++ E + + SS TR+ A++
Sbjct: 146 EKELEASKDGKIKPSSSNTRYPAIS 170
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 30.7 bits (66), Expect = 0.23
Identities = 31/114 (27%), Positives = 46/114 (40%)
Frame = +3
Query: 285 TLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVI 464
TL+ T V+ ++ + DK +D + NSNSEKE + E E I
Sbjct: 210 TLQDTFEEVERTLTKQVSDAKIADKPLKD-SMFNSNSEKEKIMHALEKAEKDADIYSEFI 268
Query: 465 EKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQD 626
++ ME S +SS E + +E H + D + I INE D
Sbjct: 269 QQYMEQLESSLEKSSTAIENAQNRLAEMTAHLAESSDYDNDDDTDGI--INETD 320
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 30.3 bits (65), Expect = 0.30
Identities = 38/174 (21%), Positives = 72/174 (41%), Gaps = 3/174 (1%)
Frame = +3
Query: 129 SSAPAVVTPDASATERQKSIQFADSCDQTXXXXXXXXXXXRHDTNNVLPQCDTLEQTIRL 308
+++P + DA++TE + Q A S +D + +Q+ +
Sbjct: 3 TNSPKSIDKDANSTEVDAAEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPV 62
Query: 309 VKSDISLMETFPLK-EDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELN 485
+ S +T K ED N +V +N+N +KE V NEE+ + EE E +
Sbjct: 63 DSHNESPNDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEE------EED 116
Query: 486 HSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEP--INEQDEHGEE 641
D+ + ++E+ S + H + + ++ + E +E+DE G E
Sbjct: 117 EEDDEEDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEELEDEEDEIGRE 170
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 29.9 bits (64), Expect = 0.40
Identities = 12/60 (20%), Positives = 30/60 (50%)
Frame = +3
Query: 465 EKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEA 644
E+ + L HSD++ ++ E++ +N E ++H +++ + +E D +E+
Sbjct: 3 EEDITLEHSDDLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKES 62
>SPAC3A12.13c |||translation initiation factor eIF3 complex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/73 (20%), Positives = 33/73 (45%)
Frame = +3
Query: 312 KSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHS 491
K+D + + LK+ KNCQ AE N+ + + ++ + +++ + K++
Sbjct: 150 KADYAAFQADILKKVKNCQTTAEYNNFVQDLIPLLLTGLNATNLKAVQKSVNKLVVNKEQ 209
Query: 492 DEMQSSQNEETSP 530
E S+ +P
Sbjct: 210 QEKTQSKRGAAAP 222
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 29.5 bits (63), Expect = 0.52
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 438 KISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSE-DQNHTTQVEDTNVSQSIGHIEPI 614
K T++ + KV EL H M S+ E+ NNS+ +Q T + ++ N+ ++ I+
Sbjct: 215 KSRTVDILEGKVNELTHQLNMADSKYNESKVANNSQNNQIKTLKAQNLNIHKNFQKIQSE 274
Query: 615 NEQDEHGEEAISPSLS 662
Q G + LS
Sbjct: 275 LIQTNSGLYSTKKELS 290
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 29.5 bits (63), Expect = 0.52
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +3
Query: 492 DEMQSSQNEETSPINNSEDQNHTTQVE--DTNVSQSIGHIEPINEQDE 629
D+ + +EE PI +SED NH ++++ D ++ + HI N D+
Sbjct: 276 DQKSLAPSEELDPILSSEDPNHPSKLDPLDASLLLAFCHIIKNNNPDD 323
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.1 bits (62), Expect = 0.69
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +3
Query: 309 VKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEV-----IEKV 473
++SD S P + D E ++ E + I + E+ S LE +V
Sbjct: 347 LRSDSSKPNEAPTSSENIKADQPENSTKQENPEEDMQIKDAEEH-SNLESTPAAQQTSEV 405
Query: 474 MELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISP 653
NH ++ S E +N + T +ED + IN+++ EA++
Sbjct: 406 EANNHQEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTK 465
Query: 654 SLSESS 671
S ESS
Sbjct: 466 STVESS 471
>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 865
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/69 (21%), Positives = 34/69 (49%)
Frame = +3
Query: 426 NEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHI 605
+++ ++ L++ + + + +++ NEE P+ S Q+ + +T SQS I
Sbjct: 791 HDQQQVQQLKKNLSRSYTRSRGVSLRARLNEEELPLTESITQDSQISIPETLESQST-EI 849
Query: 606 EPINEQDEH 632
PIN + +
Sbjct: 850 TPINVSEHY 858
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 28.3 bits (60), Expect = 1.2
Identities = 30/107 (28%), Positives = 42/107 (39%)
Frame = +3
Query: 351 EDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSP 530
EDK V NS I+ AN K LE+ + ++ N +DE +N S
Sbjct: 782 EDKCTAAVYFANSTEPIYPKRILSANCSSKFIVLEDCL--IIYSNDTDESDIVKNTFVSF 839
Query: 531 INNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESS 671
S +TT + SQ GHI + D + +LSE S
Sbjct: 840 NTTSNSLGNTTAL-----SQLKGHINSVIVDDSYNNIFFGGNLSEQS 881
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +3
Query: 444 STLEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQ 623
+T E VIE + N M S E + E+ QVE+ V+ + G + I E
Sbjct: 421 NTDERVIETLQRSNELLRMDISMQNEALLLRKQENDRLVKQVEELTVALNSGKMNAIVEA 480
Query: 624 DEHGEE 641
+ E
Sbjct: 481 ESSKNE 486
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 28.3 bits (60), Expect = 1.2
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Frame = +3
Query: 366 QDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSE 545
Q+V +MN E +NE+D+ + + +MQ + ++ + E
Sbjct: 55 QNVMQMNFEDEYS----EFSNEDDEAEIDNSFADSIPNEPEIPDMQDEYSRDSHSQQSVE 110
Query: 546 DQNHTTQV-EDTNVSQ-SI-GHIEPINEQDEHGEEAISPSLSE 665
+QN+TT ED +V++ S+ I +N + E+ ++E
Sbjct: 111 EQNNTTNTDEDASVNEFSVAADISDVNTLGKDNSESTEEPVNE 153
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = -3
Query: 257 IVSFTVFDFFITIYCLITAISELNAFLPFCGT 162
++SF+V +++YC + A+ E++ ++P G+
Sbjct: 53 LISFSVLG--VSVYCTMLALGEMSVYMPVAGS 82
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 552 NHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESSRATRWE 689
NHTT+V T +S S H E + + ++ +PS +E + T E
Sbjct: 18 NHTTEV--TRISNSSDHFEDSSSNVDESLDSSNPSSNEKASHTNEE 61
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -2
Query: 381 FLQHPDNFYLPLKEMSPSEKYHF*LNV*FVLKYHIEE--AHYLYRVFHCFRFLH 226
F+Q P+ +YL L+ E +H + L Y E+ H + +V H R+LH
Sbjct: 199 FIQTPEYYYLVLELADGGELFHQIVR----LTYFSEDLSRHVITQVAHAIRYLH 248
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 27.5 bits (58), Expect = 2.1
Identities = 20/80 (25%), Positives = 36/80 (45%)
Frame = +3
Query: 492 DEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESS 671
DE +++ +E ++ + D NH + E SQ+ ++ I E E PSL ++
Sbjct: 557 DEEETNTKDEFFDVD-AHDNNHANKAEP---SQTANNVHEIREPSFSSEHKPQPSLKTTT 612
Query: 672 RATRWEALADIAAELPASLT 731
+ E +IA +LT
Sbjct: 613 DVSSPETKQNIADIRKTTLT 632
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/65 (26%), Positives = 28/65 (43%)
Frame = +3
Query: 489 SDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSES 668
SD S++ +E + + E + V T + H P+ EH + + PS ES
Sbjct: 183 SDTKNSTEADEDIEMKSREVSPASNSVAATTLKPLQLHNTPLQTSQEHPKPSFHPSQFES 242
Query: 669 SRATR 683
S + R
Sbjct: 243 SFSPR 247
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 2.1
Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Frame = +3
Query: 282 DTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEV 461
+T E+T + +SL+ D+ + N+E++ + V E S ++
Sbjct: 570 ETKEETPKKTSDSLSLLTLLKSGLPTPANDLQNKSQNNERKASSQVKELEVKNYSKSTDL 629
Query: 462 IEKVMELNHSDEMQSSQNE----ETSPINNSE 545
++K + + +DE + N+ + SP SE
Sbjct: 630 LKKTLRIPRNDEPLEAANQFDLLKVSPQQKSE 661
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 27.1 bits (57), Expect = 2.8
Identities = 25/98 (25%), Positives = 44/98 (44%)
Frame = +3
Query: 282 DTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEV 461
DTL IR D++ + + L E+ + +SN L +++ NEE K++ ++
Sbjct: 46 DTLFSAIR--DHDLAPLYKY-LSENPKTSASIDFDSNF---LNSMIKKNEE-KLAEFDKA 98
Query: 462 IEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVED 575
IE ELN E+ + + N D+ Q+ D
Sbjct: 99 IEDAQELNGEHEILEAMKNKADYYTNICDRERGVQLCD 136
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 27.1 bits (57), Expect = 2.8
Identities = 26/124 (20%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Frame = +3
Query: 285 TLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVI 464
TLE+ RLVK+ + + E + L+ K +V L + ++ E+ ++S E +
Sbjct: 133 TLEEHNRLVKNGLKIREQWALESAKKTDEVKARYKEISDSL--VAVSAEKTQLSEKVEKM 190
Query: 465 EKVMELNHSDEMQ-SSQNEETSPINNSEDQNHTTQVED--TNVSQSIGHIEPINEQDEHG 635
++ +L + Q+ + ++ +++N + D TN+ + + ++ DE
Sbjct: 191 KRSTDLGAEAVLPLDFQDLRVALLSLVDERNEMQERLDILTNLLDELTLLYETDKFDETM 250
Query: 636 EEAI 647
+EAI
Sbjct: 251 KEAI 254
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.1 bits (57), Expect = 2.8
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +3
Query: 330 METFPLKEDKNCQ----DVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDE 497
++T K + CQ D +N E+E E ++ + + E++++ S
Sbjct: 272 LQTVKNKYAQRCQFFKVDYVPLNGGEEEE------EEEGEEKEDAQNIKERMVDFCFSKF 325
Query: 498 MQSSQN--EETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESS 671
M+ +Q E+ N + Q+ Q D N + + E N+++E E + + +
Sbjct: 326 MEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLN 385
Query: 672 RATRWEAL 695
+ W A+
Sbjct: 386 QQFNWTAI 393
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 27.1 bits (57), Expect = 2.8
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Frame = +3
Query: 330 METFPLKEDKNCQ----DVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDE 497
++T K + CQ D +N E+E E ++ + + E++++ S
Sbjct: 272 LQTVKNKYAQRCQFFKVDYVPLNGGEEEE------EEEGEEKEDAQNIKERMVDFCFSKF 325
Query: 498 MQSSQN--EETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLSESS 671
M+ +Q E+ N + Q+ Q D N + + E N+++E E + + +
Sbjct: 326 MEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEEIVNAREKNLLN 385
Query: 672 RATRWEAL 695
+ W A+
Sbjct: 386 QQFNWTAI 393
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/94 (24%), Positives = 35/94 (37%)
Frame = +3
Query: 318 DISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDE 497
D+ + E K DV N + + A+ I +E L ++ K LNH +
Sbjct: 2 DLEMTTASDFAEKKESVDVKRENPSFTNSIKALPIQSE------LSAMMSKDNTLNHVKQ 55
Query: 498 MQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIG 599
S + S D T E+T S S+G
Sbjct: 56 EPSDGFSSVKWASTSFDSTVTAHKEETPYSSSLG 89
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 27.1 bits (57), Expect = 2.8
Identities = 28/127 (22%), Positives = 48/127 (37%)
Frame = +3
Query: 249 RHDTNNVLPQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIAN 428
+ + N D E+ ++ D ET +K + D E N EK
Sbjct: 427 KDENNKASLHKDVEEKDTKITNEDTGKTET-DVKAKET--DSIEANDKDEKTDSK----E 479
Query: 429 EEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIE 608
EDK+ E E ++ +D ++ EE + + D+ T +DTN + +
Sbjct: 480 TEDKVEETESK-EADVKAKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNEKPAKDDNK 538
Query: 609 PINEQDE 629
NE+ E
Sbjct: 539 EANEKAE 545
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Frame = +3
Query: 372 VAEMNSNSEK--ELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINNSE 545
V E+ + +K E+G I ++ K+ L E ++ V + + + +NE+ S E
Sbjct: 916 VTEIKTLQDKIMEIGGIRYRIQKSKVDDLHEQLKFVKDKLNKMSFKKKKNEQRSQSFQVE 975
Query: 546 DQNHTTQVEDT--NVSQSIGHIEPINEQ-DEH 632
N T++ + T +++ ++ +N+ DEH
Sbjct: 976 LSNLTSEYDTTTESIATLKTELQSLNKYVDEH 1007
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 408 GAIVIANEEDKISTLEEVIE-KVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNV 584
G + ++++ ++EEV E + + + SDE + ++EE S + ED ++VED
Sbjct: 930 GFLGAPSDDEGDDSVEEVSEYEASDADPSDE-EEEESEEYSEDASEEDGYSESEVEDEES 988
Query: 585 SQSIGHIEPINEQDEHGEEA 644
+ +E Q++ +A
Sbjct: 989 GEDWDELERKARQEDAKHDA 1008
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +3
Query: 477 ELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPI 614
E + E + S++EE+ P NN + +N + +S S +PI
Sbjct: 301 ETKQTHETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKPI 346
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/102 (25%), Positives = 38/102 (37%)
Frame = +3
Query: 273 PQCDTLEQTIRLVKSDISLMETFPLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTL 452
P + EQ R V + S + PLK N E NSNS + N +T
Sbjct: 173 PFSSSSEQHFRKVPALPSKLPPKPLKITANSSLGQETNSNSSSFQSTLFSLNTAPFSATS 232
Query: 453 EEVIEKVMELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDT 578
++++ + L SS PI +QN +DT
Sbjct: 233 QQLVHDSVSLRR----PSSNIPAQKPIPPKPEQNEIIITKDT 270
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Frame = +3
Query: 435 DKISTLEEVIEKVMELNHSDEMQSSQNEETSP-INNSEDQNHTTQVEDTNVSQ---SIGH 602
+K+++ + + + +L+ +D ++ TS +N +D+N +T EDT+ S+ S G
Sbjct: 941 EKLNSDNHIPKALQKLDSADPIRKPSLLHTSKSYSNPDDKNTSTSDEDTSESEEESSNGL 1000
Query: 603 IEPINEQDEHGEEAI 647
E + H +++
Sbjct: 1001 FSLAREANSHASKSL 1015
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +3
Query: 477 ELNHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPS 656
E+ S +NE+ P N E N V+D N + I N+ DE+ S +
Sbjct: 5 EVVGSPTTNGDKNEDGYPAENGEGTN----VDDNNNEEEKDGIPLDNDNDENDSSEESAT 60
Query: 657 LSESSRATR 683
E+ R R
Sbjct: 61 DEEAERQVR 69
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 483 NHSDEMQSSQNEETSPINNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLS 662
N +E ++NEETS +QNHT E+ +++ +E + H E + + L+
Sbjct: 99 NQENEADEAENEETS----YSEQNHTENTEE--IAEESRPLERTHSGSNHHEASSTGHLN 152
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +3
Query: 360 NCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNEETSPINN 539
N V+E+N +S++E +A + + +E ++K E HS + N + SP N+
Sbjct: 760 NTASVSEINFDSDEEEDIRRLA-----VESAQEAVQKARE--HSQLFDA--NRQQSPNNS 810
Query: 540 SEDQN 554
S D N
Sbjct: 811 SSDMN 815
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +3
Query: 369 DVAEMNSNSEKELGAIVIANEEDKISTLEEVIEKVMELNHSDEMQSSQNE-ETSPINNSE 545
D E + E AI++ ST E + +SS +SP NS+
Sbjct: 322 DEKETEAKHEIRAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSENSD 381
Query: 546 DQNHTTQVEDTNVSQSIGHIEPINEQD-EHGEEAISP 653
+ T+V+ N S ++ ++++ E+G+ P
Sbjct: 382 TSDDLTKVDSPNKSLVNDNVSAKHDKESENGKSKFPP 418
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 8.5
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Frame = +3
Query: 342 PLKEDKNCQDVAEMNSNSEKELGAIVIANEEDKISTLEEVI----EKVMELNHSDEMQ-S 506
PLKE + + VA ++SN+E + +I E +I L + E M + S S
Sbjct: 94 PLKEAEGIKIVASLSSNNE-PIPESLIRKELLEIRYLHPGMIVMGESPMNMAKSGSKNLS 152
Query: 507 SQNEETS--PINNSEDQNHTTQVEDTNVSQSIGHIEPINEQD 626
S+N T IN+ T+V + S S+ EP +D
Sbjct: 153 SENMATEIFEINSGLSAQSGTEVGSSQSSPSVNESEPKATED 194
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 534 NNSEDQNHTTQVEDTNVSQSIGHIEPINEQDEHGEEAISPSLS 662
N + + N+ Q ++ SQS+GHI+ + HG+ +S LS
Sbjct: 102 NITTNSNNNAQTISSS-SQSVGHIDNPSGLGTHGKVRLSIKLS 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,860
Number of Sequences: 5004
Number of extensions: 56243
Number of successful extensions: 254
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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