Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24c07
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   1.9  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.8  
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch...    26   5.8  
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    25   7.7  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   7.7  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   7.7  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 397 GLSFSAPPGYLRPTTRDSHHYVHRS 471
           GLSFS  PGY+ P+++  HH   RS
Sbjct: 59  GLSFS--PGYISPSSQSPHHGPVRS 81


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 335  WNVKAYLYSDSMLVLPD 385
            WN+KA LY D    +PD
Sbjct: 1463 WNMKANLYKDEAATVPD 1479


>SPBC30D10.08 |mgm101||mitochondrial nucleoid
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 422 PGGAENDSPGCPSRAGPACCRSIGM 348
           P G    S GC S A   CC+ +G+
Sbjct: 194 PEGIATASEGCKSNALMRCCKDLGV 218


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
 Frame = +2

Query: 446 TVTITSIARFHATFANYETKNILNGR----SEYNFYKQ---HEHLLNEPTFKDCPWLRAA 604
           T+++    R H   + Y  +++LNG+    S +N ++Q    + LL   +F+  P + AA
Sbjct: 288 TISLMIDGRLHHLISYYTPEDVLNGKLQTPSSFNLFQQLTISKDLLEYKSFRIPPLVEAA 347


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +2

Query: 506  NILNGRSEYNFYKQHEHLLNEPTFKDCPWLR 598
            ++++GR  ++ +    H+  E T    PW R
Sbjct: 1016 SVIDGRPHFSVFNYTHHMQEEKTHNRLPWHR 1046


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +1

Query: 313 GRRRSESMERQSIPILRQHAGPARLGHPGLSFS 411
           GRRRS+  ER S+PI+ Q  GP    +P  ++S
Sbjct: 156 GRRRSQGGERGSLPIV-QLDGPVLKINPLANWS 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,669,785
Number of Sequences: 5004
Number of extensions: 51958
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)