Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24b22
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 228 6e-61
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 29 0.47
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 29 0.82
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.82
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 29 0.82
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 1.1
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.4
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.4
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 5.8
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.8
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 7.6
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 7.6
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 228 bits (557), Expect = 6e-61
Identities = 106/191 (55%), Positives = 138/191 (72%)
Frame = +2
Query: 104 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 283
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 284 GKRRKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPID 463
GKRRK+TV IVL+D+ D R+ D+V+I PCP +KY +R+ +LP+
Sbjct: 81 GKRRKDTVLIVLTDEEMEDGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLA 140
Query: 464 DSVEGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDT 643
D+VEGLTG+LF+VYLKPYF+EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT
Sbjct: 141 DTVEGLTGSLFDVYLKPYFVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDT 200
Query: 644 VIHCDGEPIKR 676
+IH +GEPI R
Sbjct: 201 IIHWEGEPINR 211
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 29.5 bits (63), Expect = 0.47
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +3
Query: 78 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 251
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 252 NSSVVTQSCSRANAARKPFASCS 320
S + + +AA F+ S
Sbjct: 343 RSPPINFDGTSYDAAGNVFSPSS 365
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.82
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 473 QLNHQLAVCGLV---FHISLKDTERWI 402
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.82
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 125 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 298
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 299 ETVCIVLSD 325
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 28.7 bits (61), Expect = 0.82
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Frame = -1
Query: 473 QLNHQLAVCGLV---FHISLKDTERWI 402
QLN ++ CG++ F++ LKD E+W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 129 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 242
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 443 LVFHISLKDTERWIP-HQKDAHEGCFSQHGSSEFSHQG 333
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 150 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 293
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 128 PD-DLSTAILRRKDRPNRLIVEEAVSD 205
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +2
Query: 101 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 259
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 188 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 301
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 7.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +2
Query: 182 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 310
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,892,831
Number of Sequences: 5004
Number of extensions: 58952
Number of successful extensions: 182
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -