Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24b22
         (677 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC110913-1|AAI10914.1|  806|Homo sapiens valosin-containing prot...   308   1e-83
AL353795-2|CAH70993.1|  806|Homo sapiens valosin-containing prot...   308   1e-83
AF100752-1|AAD43016.1|  806|Homo sapiens transitional endoplasmi...   308   1e-83
AC004472-1|AAC07984.1|  806|Homo sapiens TERA_HUMAN protein.          308   1e-83
BC121794-1|AAI21795.1|  806|Homo sapiens valosin-containing prot...   305   9e-83
AF313485-1|AAG29873.1|  307|Homo sapiens valosin-containing prot...   215   9e-56
BC007562-1|AAH07562.2|  644|Homo sapiens VCP protein protein.          66   1e-10

>BC110913-1|AAI10914.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  308 bits (756), Expect = 1e-83
 Identities = 141/188 (75%), Positives = 164/188 (87%)
 Frame = +2

Query: 113 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 292
           AD+K  DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 293 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 472
           R+E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64  RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123

Query: 473 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 652
           EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183

Query: 653 CDGEPIKR 676
           C+GEPIKR
Sbjct: 184 CEGEPIKR 191


>AL353795-2|CAH70993.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  308 bits (756), Expect = 1e-83
 Identities = 141/188 (75%), Positives = 164/188 (87%)
 Frame = +2

Query: 113 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 292
           AD+K  DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 293 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 472
           R+E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64  RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123

Query: 473 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 652
           EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183

Query: 653 CDGEPIKR 676
           C+GEPIKR
Sbjct: 184 CEGEPIKR 191


>AF100752-1|AAD43016.1|  806|Homo sapiens transitional endoplasmic
           reticulum ATPase protein.
          Length = 806

 Score =  308 bits (756), Expect = 1e-83
 Identities = 141/188 (75%), Positives = 164/188 (87%)
 Frame = +2

Query: 113 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 292
           AD+K  DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 293 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 472
           R+E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64  RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123

Query: 473 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 652
           EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183

Query: 653 CDGEPIKR 676
           C+GEPIKR
Sbjct: 184 CEGEPIKR 191


>AC004472-1|AAC07984.1|  806|Homo sapiens TERA_HUMAN protein.
          Length = 806

 Score =  308 bits (756), Expect = 1e-83
 Identities = 141/188 (75%), Positives = 164/188 (87%)
 Frame = +2

Query: 113 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 292
           AD+K  DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 293 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 472
           R+E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64  RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123

Query: 473 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 652
           EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIH 183

Query: 653 CDGEPIKR 676
           C+GEPIKR
Sbjct: 184 CEGEPIKR 191


>BC121794-1|AAI21795.1|  806|Homo sapiens valosin-containing protein
           protein.
          Length = 806

 Score =  305 bits (749), Expect = 9e-83
 Identities = 140/188 (74%), Positives = 163/188 (86%)
 Frame = +2

Query: 113 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 292
           AD+K  DDLSTAIL++K+RPNRLIV+EA+++DNSVV+LSQ KM++LQLFRGDTVLLKGK+
Sbjct: 5   ADSKG-DDLSTAILKQKNRPNRLIVDEAINEDNSVVSLSQPKMDELQLFRGDTVLLKGKK 63

Query: 293 RKETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSV 472
           R+E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+V
Sbjct: 64  RREAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTV 123

Query: 473 EGLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIH 652
           EG+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVET PSP+CIVAPDTVIH
Sbjct: 124 EGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETHPSPYCIVAPDTVIH 183

Query: 653 CDGEPIKR 676
           C+GEPIKR
Sbjct: 184 CEGEPIKR 191


>AF313485-1|AAG29873.1|  307|Homo sapiens valosin-containing protein
           protein.
          Length = 307

 Score =  215 bits (526), Expect = 9e-56
 Identities = 95/127 (74%), Positives = 106/127 (83%)
 Frame = +2

Query: 296 KETVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVE 475
           +E VCIVLSDD C DEKIRM             DV+SI PCP VKYGKR+H+LPIDD+VE
Sbjct: 3   REAVCIVLSDDTCSDEKIRMNRVVRNNLRVRLGDVISIQPCPDVKYGKRIHVLPIDDTVE 62

Query: 476 GLTGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHC 655
           G+TGNLFEVYLKPYF+EAYRPI + D F+VRGGMRAVEFKVVETDPSP+CIVAPDTVIHC
Sbjct: 63  GITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGGMRAVEFKVVETDPSPYCIVAPDTVIHC 122

Query: 656 DGEPIKR 676
           +GEPIKR
Sbjct: 123 EGEPIKR 129


>BC007562-1|AAH07562.2|  644|Homo sapiens VCP protein protein.
          Length = 644

 Score = 66.1 bits (154), Expect = 1e-10
 Identities = 27/29 (93%), Positives = 29/29 (100%)
 Frame = +2

Query: 590 FKVVETDPSPFCIVAPDTVIHCDGEPIKR 676
           FKVVETDPSP+CIVAPDTVIHC+GEPIKR
Sbjct: 1   FKVVETDPSPYCIVAPDTVIHCEGEPIKR 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,996,143
Number of Sequences: 237096
Number of extensions: 2130161
Number of successful extensions: 4404
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4404
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7671262118
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)