Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24b22
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical pr...   260   6e-70
Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical pr...   252   2e-67
Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical p...   252   2e-67
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   2.3  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1 ...    28   7.0  

>Z49886-1|CAA90050.1|  809|Caenorhabditis elegans Hypothetical
           protein C06A1.1 protein.
          Length = 809

 Score =  260 bits (637), Expect = 6e-70
 Identities = 114/185 (61%), Positives = 151/185 (81%)
 Frame = +2

Query: 122 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 301
           K  D+LSTAIL+ K +PNRLIV+++  DDNSV+A+SQAKM++L LFRGD V+LKGK+RKE
Sbjct: 13  KKNDELSTAILKDKVKPNRLIVDQSEQDDNSVIAVSQAKMDELGLFRGDAVILKGKKRKE 72

Query: 302 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 481
           +V I++SD++CP+EK+RM             DVVSI P P++ YG R+H+LPIDD++EGL
Sbjct: 73  SVAIIVSDESCPNEKVRMNRVVRNNLRIRLGDVVSITPAPNLSYGTRIHVLPIDDTIEGL 132

Query: 482 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 661
           TGNLF+V+LKPYF+EAYRP+H+ D F V+  MR VEFKVVET+P+P CIV+PDT+IH +G
Sbjct: 133 TGNLFDVFLKPYFLEAYRPLHKGDIFTVQAAMRTVEFKVVETEPAPACIVSPDTMIHYEG 192

Query: 662 EPIKR 676
           +PIKR
Sbjct: 193 DPIKR 197


>Z48334-9|CAA88314.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  252 bits (616), Expect = 2e-67
 Identities = 115/185 (62%), Positives = 150/185 (81%)
 Frame = +2

Query: 122 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 301
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 302 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 481
           TV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD++EGL
Sbjct: 73  TVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGL 131

Query: 482 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 661
           TGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191

Query: 662 EPIKR 676
           +PIKR
Sbjct: 192 DPIKR 196


>Z48045-12|CAA88105.1|  810|Caenorhabditis elegans Hypothetical
           protein C41C4.8 protein.
          Length = 810

 Score =  252 bits (616), Expect = 2e-67
 Identities = 115/185 (62%), Positives = 150/185 (81%)
 Frame = +2

Query: 122 KSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 301
           K  D+L+TAIL+ K RPNRLI++++ +DDNS+V LSQAKM++L LFRGD+V+LKGK+R+E
Sbjct: 13  KKNDELATAILKDKKRPNRLIIDQSDNDDNSMVMLSQAKMDELGLFRGDSVILKGKKRRE 72

Query: 302 TVCIVLSDDNCPDEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGL 481
           TV IVL+ DNCP++KI+M             DVVSI+    ++YGKRVH+LPIDD++EGL
Sbjct: 73  TVSIVLNADNCPNDKIKMNKVVRNNLRSRLGDVVSISSA-QLEYGKRVHVLPIDDTIEGL 131

Query: 482 TGNLFEVYLKPYFMEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDG 661
           TGNLF+V+L+PYF +AYRP+H+ D F V+  MR VEFKVVETDP+P CIVAPDTVIH +G
Sbjct: 132 TGNLFDVFLRPYFTDAYRPVHKGDIFTVQAAMRTVEFKVVETDPAPACIVAPDTVIHYEG 191

Query: 662 EPIKR 676
           +PIKR
Sbjct: 192 DPIKR 196


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
           protein C10C6.1 protein.
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 111 WQIIKALMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRA 287
           W       + R RSS+  +DP +S S   S  T T S H      +   SS  T S +R 
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANR- 114

Query: 288 NAARKPFASCSQTIIALMR 344
           + A +P    S + + L R
Sbjct: 115 SPANRPSLHSSTSPVTLQR 133


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
           protein.
          Length = 1565

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +3

Query: 111 WQIIKALMIYRPRSSVARTDPTVSLSKKQSAMT-TQSWHFHRPKWSNFNSSVVTQSCSRA 287
           W       + R RSS+  +DP +S S   S  T T S H      +   SS  T S +R 
Sbjct: 56  WTSASMTNLCRVRSSLGHSDPQLSSSSTNSFNTSTSSLHPATKSSTTALSSFSTSSANR- 114

Query: 288 NAARKPFASCSQTIIALMR 344
           + A +P    S + + L R
Sbjct: 115 SPANRPSLHSSTSPVTLQR 133


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 136 IIRAFIICHFIQNLLLESKNYYNFY 62
           ++ AF++C  + N+LL SK+ Y FY
Sbjct: 8   LLLAFVVCLTLFNVLLWSKSNYGFY 32


>Z66562-5|CAA91466.1|  250|Caenorhabditis elegans Hypothetical
           protein F42E11.4 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 101 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 250
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


>AB107358-1|BAD89379.1|  250|Caenorhabditis elegans troponin I 1
           protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 101 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 250
           L K+  NK+ +DL T  LR++    +++ E  V+  N       AK+E +
Sbjct: 61  LRKLLMNKAAEDLKTQQLRKEQERVKVLAERTVALPNVDSIDDHAKLEAI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,224,960
Number of Sequences: 27780
Number of extensions: 341357
Number of successful extensions: 862
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)