Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24b16
(325 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal prote... 101 9e-23
Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical pr... 31 0.19
AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear recep... 31 0.19
AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical ... 30 0.33
Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical pr... 29 0.58
AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical... 28 1.3
U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily ass... 27 2.3
AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical ... 27 2.3
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 27 3.1
Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical pr... 27 4.1
AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical ... 27 4.1
AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical ... 27 4.1
Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical pr... 25 9.5
AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical... 25 9.5
>U80953-1|AAB52557.2| 56|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 29 protein.
Length = 56
Score = 101 bits (243), Expect = 9e-23
Identities = 40/56 (71%), Positives = 48/56 (85%)
Frame = +1
Query: 112 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKLD 279
MG N+W+SHPR++G GSRSCR C+ HGLIRKYGL++CR+CFRE A DIGFKKLD
Sbjct: 1 MGFQNLWFSHPRKFGPGSRSCRVCAGHHGLIRKYGLDLCRRCFREQARDIGFKKLD 56
>Z72504-3|CAA96605.1| 449|Caenorhabditis elegans Hypothetical
protein C29E6.5 protein.
Length = 449
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 172 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 273
CR C R+ + +G++ICR C + + KK
Sbjct: 47 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 80
>AF273784-1|AAG15133.1| 459|Caenorhabditis elegans nuclear receptor
NHR-43 protein.
Length = 459
Score = 31.1 bits (67), Expect = 0.19
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 172 CRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 273
CR C R+ + +G++ICR C + + KK
Sbjct: 57 CRVCERRYDGSQHFGIDICRACAAFFRRSVAVKK 90
>AF016445-5|AAC69059.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.9 protein.
Length = 250
Score = 30.3 bits (65), Expect = 0.33
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 195 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 46
M A S PR+ + + N + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTEAYNCPNVAYPRLNCASITLSQCNSPA-WRT 141
>Z74040-6|CAA98509.2| 457|Caenorhabditis elegans Hypothetical
protein K10D6.1 protein.
Length = 457
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 171 MPILLQQAWLNPQVRFEHMQTVLQRVCS*HRIQE 272
M I + + WL+P ++F+H+ Q + H++ E
Sbjct: 101 MDIYINEMWLDPALKFDHLNPCKQNLSVSHQVLE 134
>AF022985-15|AAB69969.2| 435|Caenorhabditis elegans Hypothetical
protein T15B7.16 protein.
Length = 435
Score = 28.3 bits (60), Expect = 1.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +3
Query: 171 MPILLQQAWLNPQVRFEHMQTVLQRV 248
+ +L Q W +P++RF+H+ LQ +
Sbjct: 80 LDLLFSQIWHDPRLRFDHLTNCLQNL 105
>U97008-7|AAB52313.1| 385|Caenorhabditis elegans Temporarily
assigned gene nameprotein 293 protein.
Length = 385
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 117 AHFKKLNCFSLTSNKLDTPSRWRT 46
A F +LNC ++T+N+ P+ WRT
Sbjct: 255 AQFPRLNCDTITNNQCKDPN-WRT 277
>AF016445-6|AAC69053.1| 250|Caenorhabditis elegans Hypothetical
protein T05B4.10 protein.
Length = 250
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 195 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 46
M A S PR+ + + + + +LNC S+T ++ ++P+ WRT
Sbjct: 93 MKTAAASTCPRTCGLCCQTDAYSCPNVAYPRLNCASITLSQCNSPA-WRT 141
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 159 RISVMPILLQQAWLNPQVRFEHMQTVLQRVCS*H 260
RI P++L+Q WL R E R+CS H
Sbjct: 27 RIPKRPLILRQRWLTAIGRTEETVVSQLRICSAH 60
>Z81529-7|CAB04292.1| 248|Caenorhabditis elegans Hypothetical
protein F35E8.9 protein.
Length = 248
Score = 26.6 bits (56), Expect = 4.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -2
Query: 195 MPVGAGSA*PRSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTPSRWRT 46
M A S PR+ + + + + +LNC S+T+++ +P+ WRT
Sbjct: 93 MKTAAQSTCPRTCGLCCQTSAYSCPNVAYPRLNCASITASQCISPA-WRT 141
>AF100669-3|AAK39266.1| 747|Caenorhabditis elegans Hypothetical
protein R11E3.4 protein.
Length = 747
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 106 LKMGHANIWYSHPRRYGQGSR-SCRSCSNRHGLIRKY 213
LK A W+ +P+R G +R C SC ++R +
Sbjct: 482 LKKQLARPWFVNPKRIGNVARICCHSCQPNMAMVRVF 518
>AC006608-4|AAF39758.2| 381|Caenorhabditis elegans Hypothetical
protein C15F1.5a protein.
Length = 381
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 214 RTCGLSHACWSRIGMTEILVRICEGEN 134
R C ++H C+S + E + CEGEN
Sbjct: 40 RVCPVAH-CYSSLTAPEPMTSTCEGEN 65
>Z81576-5|CAB04646.2| 1696|Caenorhabditis elegans Hypothetical protein
R10E8.6 protein.
Length = 1696
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 2 TASVTAFSTCRSFVQVRHLEGVSNLLLVSEKQFNFLKWATQIFGIL 139
+ S+ F C +F E + LLV+E KW ++ G L
Sbjct: 1615 STSIKLFFICENFDMENLYELIGRPLLVTEDAVKVRKWFFKLIGTL 1660
>AL032627-12|CAB63357.1| 577|Caenorhabditis elegans Hypothetical
protein Y41C4A.9 protein.
Length = 577
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 69 LICCSLARNNLIS*N-GPRKYLVFSPSQIRTRISVMPILLQQAWLNPQVRFEHMQT 233
L+C L +++ + G +L+ S + T + I+LQQ W N Q+ F H+ +
Sbjct: 282 LVCSPLGLRMILNGDDGNEAHLISSINM--TIVDRTDIMLQQNWENLQLIFSHLHS 335
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,001,795
Number of Sequences: 27780
Number of extensions: 137286
Number of successful extensions: 353
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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