Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24b15
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   2.3  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   5.2  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    24   9.1  
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo...    24   9.1  

>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -1

Query: 276 SMHFIGQNKIFKNHYIKNHNLSIQRFQK-RKRVA 178
           S+H +G  +  K H ++N  L IQR +  R+R+A
Sbjct: 93  SLHDVGDFEQCKRHLVENGKLFIQRARACRQRIA 126


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 246 FKNHYIKNHNLSIQRFQKRKRVASVKNATITLNY 145
           F  +YI+NH L+I+  QK     + +   + LNY
Sbjct: 118 FYENYIRNHPLAIEALQKS---TAPRQTGLKLNY 148


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 140 LIGVIVNKCYFHKLATA*FPRAGNTAYTAHRRRFLKSRD 24
           L+G +  + +F    +   PR+     T H+RR L  R+
Sbjct: 18  LVGTLSQRRHFTPSRSRYTPRSAQRTVTPHKRRALARRN 56


>SPAC2G11.04 |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 301

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -1

Query: 327 YINSLQFLPS 298
           Y+NSLQFLPS
Sbjct: 57  YLNSLQFLPS 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,289,820
Number of Sequences: 5004
Number of extensions: 20899
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)