Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24b09
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0743 + 24835349-24836009,24836925-24837068,24837154-248373... 32 0.43
05_07_0280 - 28920864-28920971,28921076-28921175,28921267-289213... 32 0.56
08_02_1350 - 26312275-26313613,26314833-26315110 31 0.74
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 30 1.7
04_04_0734 + 27648661-27649596 29 3.0
08_01_0542 + 4712480-4712635,4712683-4712787 29 4.0
08_01_0437 + 3850137-3850581,3851134-3851159 28 6.9
07_01_0535 + 3952066-3952986 28 6.9
01_06_1074 + 34318685-34319314,34319429-34319546,34319662-343198... 28 6.9
12_02_0766 - 22982606-22983288,22984352-22984706 28 9.2
>01_05_0743 +
24835349-24836009,24836925-24837068,24837154-24837306,
24837627-24837742,24837826-24837993,24838610-24838737,
24838827-24838926,24839119-24839205
Length = 518
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +1
Query: 388 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 564
VL + D+R YT GR + QFG+ T G +S+ R +A R+ EDV
Sbjct: 54 VLGRPMEDVRATYTFGRELGRGQFGVTYLVT-HKATGKRFACKSIATRKLAHRDDIEDV 111
>05_07_0280 -
28920864-28920971,28921076-28921175,28921267-28921394,
28922013-28922180,28922280-28922395,28922584-28922736,
28922904-28923047,28923401-28924133
Length = 549
Score = 31.9 bits (69), Expect = 0.56
Identities = 20/59 (33%), Positives = 29/59 (49%)
Frame = +1
Query: 388 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 564
VL + D+R YT GR + QFG+ AT G +S+ R +AR + +DV
Sbjct: 78 VLGRPMEDVRATYTFGRELGRGQFGVTYLATHKPTGRRY-ACKSIAARKLARPDDLDDV 135
>08_02_1350 - 26312275-26313613,26314833-26315110
Length = 538
Score = 31.5 bits (68), Expect = 0.74
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Frame = -3
Query: 450 RRNC-TSHSILYANVC-NTTMKNSTPQAISTLSLPSTITHPPN*PNKFTITNIVARNLPQ 277
R NC T H++ Y C + +S+P IS L ++ +RN+P
Sbjct: 387 RINCGTLHNVAYQENCWSEAQSSSSPPDISELG-DERGGFSSGEETMYSAETRESRNIPS 445
Query: 276 PQDMS--M*SLCSDHWNHMRRPSSRNVDIRHSRATVGKTFLPFRIT*SATSSAVDTYSLG 103
P++ + M NH + S ++V+ + TF+P R ++A+ S
Sbjct: 446 PKEKNPKMVGRSQSFVNHSKWDSPKSVESSKGAPSKSHTFIPLRKP-HLQAAAISQKSQD 504
Query: 102 ICIFHAEHSTNTEKRNLTE 46
F S++ +KRNL++
Sbjct: 505 --FFSPTVSSSMKKRNLSQ 521
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 30.3 bits (65), Expect = 1.7
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = +1
Query: 208 PGGRSPHVVPVVRAERLHGHVL-GLRQIPRHNVCDS--KFIWSIRRMCYGARKAQSGYRL 378
PGG S G V G R+ + V D+ + + +RR+ YG R+ SG RL
Sbjct: 97 PGGGSARSAAAAAPTGRPGTVAAGTRRAGKKAVLDAGGRRVGHLRRLSYGVRERGSGRRL 156
Query: 379 RRAVLHSCITDIRVQYTMG 435
R L C+T+ V + G
Sbjct: 157 TR--LGWCMTEFGVDHGGG 173
>04_04_0734 + 27648661-27649596
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 515 CALQLGPPPTPAVALRSMPNCGEG 444
CA PPP+PA L+ +P C G
Sbjct: 205 CAPPPNPPPSPATPLQPLPECDGG 228
>08_01_0542 + 4712480-4712635,4712683-4712787
Length = 86
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +3
Query: 192 ALYPHSWRTVSACGSSGQ---SRETTWTCPGAAANSS 293
A+ H+W +CGSSG + ETT T P A S
Sbjct: 14 AMIAHAWHDDGSCGSSGAAAIAAETTQTAPTTEARIS 50
>08_01_0437 + 3850137-3850581,3851134-3851159
Length = 156
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 479 VALRSMPNCGEGTVRPIVYCTRMSVIQL*RTARRKRYP 366
V LRS P CG R +V+C +Q ARR+R P
Sbjct: 12 VQLRSHP-CGPPMGRTMVWCLHQDSVQRCAHARRRRRP 48
>07_01_0535 + 3952066-3952986
Length = 306
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = -2
Query: 745 IENCQYEDKHQSRQLRPVAHRHQYHQDAPEKILYDLQE*DFKS*ERDEHEGQQDATGELQ 566
++ CQYEDK Q + + +QD +KI +E + + E + Q + L+
Sbjct: 126 VQQCQYEDKKVPNQCKDEENTPGQYQDEEQKIAKQCKEEEEEEEENALEKYQDEEHKSLK 185
Query: 565 VRLRFVLSERR 533
+ + +ER+
Sbjct: 186 AQHQCQDTERK 196
>01_06_1074 +
34318685-34319314,34319429-34319546,34319662-34319814,
34319906-34320021,34320135-34320302,34320424-34320551,
34320645-34320744,34320866-34320958
Length = 501
Score = 28.3 bits (60), Expect = 6.9
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +1
Query: 388 VLHSCITDIRVQYTMGRTVPSPQFGIDRSATAGVGGGPS*RAQSVRGRAVARREQTEDV 564
VL + D+R YT+G+ + QFG+ S G +++ R ++ +E EDV
Sbjct: 49 VLGRPMEDVRSIYTIGKELGRGQFGV-TSLCTHKATGQKFACKTIAKRKLSTKEDVEDV 106
>12_02_0766 - 22982606-22983288,22984352-22984706
Length = 345
Score = 27.9 bits (59), Expect = 9.2
Identities = 8/25 (32%), Positives = 12/25 (48%)
Frame = +3
Query: 189 CALYPHSWRTVSACGSSGQSRETTW 263
C YP +W + C G+S+ W
Sbjct: 170 CIGYPPAWEKIKICSGHGRSKHGAW 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,774,935
Number of Sequences: 37544
Number of extensions: 469708
Number of successful extensions: 1679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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