Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24b05
         (647 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical pr...   231   4e-61
Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical pr...   231   4e-61
AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical ...    82   4e-16
AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical ...    28   5.0  
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>Z66519-3|CAA91372.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3b protein.
          Length = 634

 Score =  231 bits (564), Expect = 4e-61
 Identities = 110/201 (54%), Positives = 140/201 (69%)
 Frame = +1

Query: 43  QGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGKPGVCLVVSGP 222
           QGVEY+FG+VG PVIE  MA Q+ G+KYIG RNEQAA YAAQA GYLTGKP   LVVSGP
Sbjct: 85  QGVEYMFGVVGFPVIEVGMAAQAHGIKYIGCRNEQAAAYAAQAMGYLTGKPVALLVVSGP 144

Query: 223 GLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMYCKYAARPPSPRL 402
           G+LH IGG+ANA VNCWP+V I G+   D E  G FQEW Q +S R  CK+ +RP S   
Sbjct: 145 GILHAIGGLANATVNCWPVVCIGGTADVDLENRGAFQEWSQQESVRNSCKHVSRPTSLHT 204

Query: 403 IPQHVEKAVRLALAGRPGVSYLDMPGTLLMAEVDEGKVPLDYYSADTVKLAHPDPALVDQ 582
           IP H+EKAVR A+ GRPG  Y+D+PG L++   +E ++           ++ P  A +++
Sbjct: 205 IPAHIEKAVRCAMYGRPGAVYVDLPGNLVLTSTEE-EISFPPQVPLPAPVSIPPIAEIEK 263

Query: 583 AAELLSKAERPLIIVGKGAAY 645
           A + L  A++PL+IVGKGAA+
Sbjct: 264 AIDTLKSAKKPLVIVGKGAAW 284


>Z66519-2|CAA91381.1|  634|Caenorhabditis elegans Hypothetical
           protein B0334.3a protein.
          Length = 634

 Score =  231 bits (564), Expect = 4e-61
 Identities = 110/201 (54%), Positives = 140/201 (69%)
 Frame = +1

Query: 43  QGVEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGKPGVCLVVSGP 222
           QGVEY+FG+VG PVIE  MA Q+ G+KYIG RNEQAA YAAQA GYLTGKP   LVVSGP
Sbjct: 85  QGVEYMFGVVGFPVIEVGMAAQAHGIKYIGCRNEQAAAYAAQAMGYLTGKPVALLVVSGP 144

Query: 223 GLLHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMYCKYAARPPSPRL 402
           G+LH IGG+ANA VNCWP+V I G+   D E  G FQEW Q +S R  CK+ +RP S   
Sbjct: 145 GILHAIGGLANATVNCWPVVCIGGTADVDLENRGAFQEWSQQESVRNSCKHVSRPTSLHT 204

Query: 403 IPQHVEKAVRLALAGRPGVSYLDMPGTLLMAEVDEGKVPLDYYSADTVKLAHPDPALVDQ 582
           IP H+EKAVR A+ GRPG  Y+D+PG L++   +E ++           ++ P  A +++
Sbjct: 205 IPAHIEKAVRCAMYGRPGAVYVDLPGNLVLTSTEE-EISFPPQVPLPAPVSIPPIAEIEK 263

Query: 583 AAELLSKAERPLIIVGKGAAY 645
           A + L  A++PL+IVGKGAA+
Sbjct: 264 AIDTLKSAKKPLVIVGKGAAW 284


>AF067623-1|AAC17553.2|  640|Caenorhabditis elegans Hypothetical
           protein T26C12.1 protein.
          Length = 640

 Score = 81.8 bits (193), Expect = 4e-16
 Identities = 49/147 (33%), Positives = 76/147 (51%)
 Frame = +1

Query: 49  VEYVFGIVGIPVIETAMAFQSAGLKYIGMRNEQAACYAAQATGYLTGKPGVCLVVSGPGL 228
           VE +F + G  +    +A +  G+K +  R+E  A +AA A   L    GV  V +GPGL
Sbjct: 71  VEEIFVLCGGHISPILVAAEKLGIKIVDTRHEVTAVFAADAVARLRQSIGVAAVTAGPGL 130

Query: 229 LHCIGGMANAQVNCWPLVVIAGSCPEDHEAIGGFQEWPQVDSSRMYCKYAARPPSPRLIP 408
            + I  + NAQ+   PL++I G+ P   +  G  Q+  Q+   R  CKY AR    R I 
Sbjct: 131 TNTITAVKNAQMAESPLLLIGGAAPTLLKGRGALQDIDQMVLFRPLCKYVARVERLRDIV 190

Query: 409 QHVEKAVRLALAGRPGVSYLDMPGTLL 489
             V +A++ A +G PG  +++ P  +L
Sbjct: 191 PTVREAIKAAKSGCPGPVFVEFPVDVL 217


>AC024776-1|AAK68468.1|  338|Caenorhabditis elegans Hypothetical
           protein Y41D4B.18 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 538 DTVKLAHPDPALVDQAAELLSKAERPLIIVGKGAAY 645
           DT++L HPDPA++ +  E  S A    +   +G  Y
Sbjct: 182 DTLRL-HPDPAIISRVFEWYSNATNLYVTPSQGVYY 216


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 478 GTLLMAEVDEGKVPLDYYSADTVKLAHPDPALVDQAAELLSKAERPLIIVGK 633
           G L +  +  G V +DY    +V   HP+ A V +A E L K E     +GK
Sbjct: 355 GILCVEGIAGGPVHIDYNCVPSVVYTHPEVAWVGKAEEQL-KQEGVAYKIGK 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,383,578
Number of Sequences: 27780
Number of extensions: 382767
Number of successful extensions: 915
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 913
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)