Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24a20
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 33 0.032
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 30 0.39
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 29 0.52
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 29 0.69
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar... 28 1.2
SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces pom... 28 1.6
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 27 2.1
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.1
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 4.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.8
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 26 4.8
SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subun... 26 6.4
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 26 6.4
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 6.4
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 8.5
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 33.5 bits (73), Expect = 0.032
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +2
Query: 395 VEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKK-EEKILEC 571
+E+QL LKN L++ EL F + EQ +L H K +Q V K+ EE+
Sbjct: 60 LEFQLENLKNDLKRKELEF--EREQIELQRKLAEEHEQKNSLQLRLTLVEKQLEEQSTSY 117
Query: 572 LMENDEINNSLDS 610
E +E+ N ++
Sbjct: 118 QKEIEEVRNEKEA 130
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.9 bits (64), Expect = 0.39
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -1
Query: 252 KEFSKIGVKFSVLRHMRHTVEKSISSYFFQ*KIYMKFLENIWEYLNVSSLKLLFTE 85
K F K K + + H+ + V S +Y +IY + +I+ ++NV + LF +
Sbjct: 1277 KFFEKPKYKITDVIHVLNKVHDSCQAYKVNYEIYNALIRSIYRFINVEAFNSLFID 1332
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +2
Query: 434 KSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSE 613
K + FAN + L A E K ++ +++KEE+ E ++ +++ NS
Sbjct: 1061 KKQKEFANQYDSTLLAQAQEKLEKLKVEVERRRRLLSEKEERRKELAIKIEQVTNSCSDL 1120
Query: 614 NSITN 628
TN
Sbjct: 1121 ELRTN 1125
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/59 (27%), Positives = 30/59 (50%)
Frame = +2
Query: 395 VEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILEC 571
V+ + +L +L K +LH A + + +N+ K+ + ND +TK + +I EC
Sbjct: 338 VDLETPKLVEELTK-QLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDEC 395
>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
factor|Schizosaccharomyces pombe|chr 3|||Manual
Length = 203
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +2
Query: 557 KILECLMENDEINNSLDSENSITN---TFETAVHILGTNKPNASFESSDELFKAND 715
++ C ++I N +SE + TFET V +L N S ES +L +ND
Sbjct: 36 RVWSCTCSRNQIVNQAESERCPIDPFQTFETLVDVLAEVLVNVSSESRIQLRGSND 91
>SPAC17H9.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 601
Score = 27.9 bits (59), Expect = 1.6
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Frame = +2
Query: 302 VERNDGLPQNICEECFTKINGILKFRE-ACKIVEYQLIQLKNKLQKSEL----HFANDSE 466
V+RND I K N +LK + A K + KL++S+ +F
Sbjct: 8 VQRNDVQKYPITRFVKRKSNVVLKKNKGAMKSNSNSRSRGNKKLKESQFSSRDNFRTTQT 67
Query: 467 QAKLN-DASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSENSITNTFETA 643
QA + + S+NT+ ++ DN+ K+E + ++ D ++S++ EN I+ T
Sbjct: 68 QASSSSEPSDNTNRLVPVVIIDNNTPKKEESNAEKLKLDKD--SSSVNYENQISKPLITF 125
Query: 644 VHILGT-NKPNASFESSD 694
I T N P + D
Sbjct: 126 SDIHETVNVPFLCLDKHD 143
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -3
Query: 370 KYTINFCETFLTYVLG*PIISFYLNPCNYINCCRIIN-FIKRIFKDRCQILCTKTHATYS 194
K+ I TFL L +IS Y + +Y + +IN + + + ++L T+ H S
Sbjct: 113 KWAIKEKRTFLRQALETKLISLYYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLES 172
Query: 193 RKIH 182
+ H
Sbjct: 173 KVYH 176
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 27.5 bits (58), Expect = 2.1
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +2
Query: 344 CFTKINGILKFREACKIVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQ 523
C T G+ + + + L+ L L +EL + SE+ N ENT Y++I Q
Sbjct: 416 CRTNPKGLFCNPQIVHSIAFSLLLLNTDLHIAEL---SASERMSRNQFVENT--YRSIKQ 470
Query: 524 TDNDCVTKKEEK 559
ND EEK
Sbjct: 471 ALNDSFDGNEEK 482
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 443 LHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEI 592
L A D+E L+ A + KTI+ TD V +++E L+ N+E+
Sbjct: 410 LALATDTENVTLSTAKAHLTRLKTIVSTDASLV-----ELIEVLIFNEEL 454
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/114 (21%), Positives = 43/114 (37%)
Frame = +2
Query: 218 TENLTPIFENSFNEIDYSTTVYIITGIKVERNDGLPQNICEECFTKINGILKFREACKIV 397
TENL + F +DY+ ++ + + L C + + + +
Sbjct: 409 TENLVAQINSEFGSLDYTPVIHFHQLLDPDEYYALLSVANIACVSSVRDSMN----TMAL 464
Query: 398 EYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEK 559
EY Q KNK F+ +E L+ N + Y +T N C+ E++
Sbjct: 465 EYVACQQKNKGSLILSEFSGTAE-LLLSAYLVNPYDYSRFAETINYCLNMTEKE 517
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 389 KIVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTII 520
K++EYQL Q + L S H A+ + S + GY++I+
Sbjct: 1229 KLLEYQLDQTEVYLDLSGTHAASPRSSMTVKPLSLCSSGYESIV 1272
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.2 bits (55), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +2
Query: 440 ELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEINNSLDSENS 619
ELH + S++A +ND E+ I+ T V K + L N SLD E++
Sbjct: 10 ELHRMDSSDEASINDDQED------ILDTPRTRVRKMLASVDMQLSSNAVSEASLDKEST 63
Query: 620 ITN 628
+ N
Sbjct: 64 VGN 66
>SPAPYUG7.04c |rpb9||DNA-directed RNA polymerase II complex subunit
Rpb9 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +2
Query: 353 KINGILKFREACKIVEYQLIQLKNKLQKSELHFANDSEQAKLNDASENTHGYKTIIQTDN 532
K++ +L+ AC+ +Y I +K+ + EL +N +DAS + T+ ++D
Sbjct: 20 KVDRVLRL--ACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTD----PTLPRSDK 73
Query: 533 DC 538
+C
Sbjct: 74 EC 75
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -1
Query: 141 LENIWEYLNVSSLKLLFTEILLN--CVKIIKLFIHNIYYSYWN 19
L+ + +L K +F +L+ C+ + LF H I + WN
Sbjct: 204 LKGRFRHLFCRWFKAIFVALLITGICITVDSLFYHRIQFVAWN 246
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -1
Query: 144 FLENIWEYLNVSSLKLLFTEILLNCVKIIKLFIH 43
F+ +W YL++ S +L+ + LL +LF+H
Sbjct: 563 FIYAVWPYLDIKSKELVTLQWLLEENTFQELFLH 596
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.4 bits (53), Expect = 8.5
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +2
Query: 545 KKEEKILECLMENDEINNSLDSENSITNTFETAVHILGTNKPNASFESSDELFKANDVNN 724
+KE +IL +N + ++ S+N+IT T G NK N ND+ N
Sbjct: 452 RKEIQILRHTSQNGDQESNESSKNAIT----TKTTDKGNNKENTMLNDGSTAPAKNDIRN 507
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,855,539
Number of Sequences: 5004
Number of extensions: 59457
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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