Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24a20
         (735 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    27   0.24 
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   3.0  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   3.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.1  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
 Frame = +2

Query: 434 KSELHFANDSEQAKLNDASENTHGYKTIIQTDNDCVTKKEEKILECLMENDEIN------ 595
           K+ L   N S +   N A    H   TII   N+ ++  EEK     +EN+++N      
Sbjct: 401 KNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEK---RTIENEQLNRMYKSY 457

Query: 596 -NSLDSENSITNTFETAVHILGTNKPNASFESSDELFK 706
            N +D E    N  E +         NA    + E+FK
Sbjct: 458 PNYIDKETKDMN-LEISTRPKSNTVENACVLKNTEIFK 494


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +3

Query: 126 PKYFPKISYKSFIEKNTN*WIFLLYVACVLV 218
           P+ +P I+Y+  + +    ++F L + C+L+
Sbjct: 197 PEPYPDITYEIRLRRRPMFYVFNLILPCILI 227


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 99  LLFTEILLNCVKIIKLFIHNIYY 31
           LLFT IL+    +I + I N++Y
Sbjct: 302 LLFTMILVGLSVVITIVILNVHY 324


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 335 CEECFTKINGILKFREACKIVEYQLIQLKNKLQKSE 442
           C+EC  K    +  R  C + EYQ   +K K +K++
Sbjct: 239 CQECRLKKCLTVGMRPECVVPEYQ-CAVKRKEEKAQ 273


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 335 CEECFTKINGILKFREACKIVEYQLIQLKNKLQKSE 442
           C+EC  K    +  R  C + EYQ   +K K +K++
Sbjct: 36  CQECRLKKCLTVGMRPECMVPEYQ-CAVKRKEKKAQ 70


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 548 KEEKILECLMENDEINNSLDS 610
           K  KILEC  +   IN  L+S
Sbjct: 115 KISKILECFFKYKTINQILNS 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,401
Number of Sequences: 438
Number of extensions: 3850
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)