Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24a11
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    30   0.35 
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    27   1.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    27   1.8  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   4.3  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.6  
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    25   7.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   9.9  

>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
 Frame = -3

Query: 306 ELFQVDAIEASGAIEAMGTSSNVIGQSNQQPGIVDIG-EHGQVTKDEATNPQWKAVTAFF 130
           EL +  A  A   + + G  S+ +   ++ PG+VD+G E+ +V  DEAT  +  A  AF 
Sbjct: 377 ELLERSADTADADVPS-GLYSHALVNLHEHPGLVDLGSENIRVPIDEATALKSFAKAAFL 435

Query: 129 AQTRSRR*RVVGYWFGHF 76
             + ++      Y FG +
Sbjct: 436 GHSSAQLRMGAVYEFGKY 453


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +2

Query: 38  NCLCEFKTFQILIK*PNQYPTTRYRRL 118
           NCL EF T Q+ ++  NQ     YRRL
Sbjct: 187 NCLMEFPTPQMELRINNQVAHANYRRL 213


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 26/85 (30%), Positives = 35/85 (41%)
 Frame = +1

Query: 100 NTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFDRTTS 279
           +TL++T      C    P   G  + G   ++ +VY TG  +  T      S S   TTS
Sbjct: 83  STLTATEVSSSLCTTPCP-GYGSLMCGG-DLYWSVYLTGNGVLQTT---VSSSSVSSTTS 137

Query: 280 FDSIDLEELSEPTTTLQPAQQSSES 354
             S      S  TTT  P+  SS S
Sbjct: 138 SSSSSSPSSSSTTTTTSPSSSSSSS 162


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 525 SVPDNDHHDSGLNVTWLGHCCSILLHHG-VQYL 620
           S+P +   +  L  +WL H  ++L +HG ++YL
Sbjct: 386 SLPLDQEKELSLRKSWLSHFSNLLFNHGQLKYL 418


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +1

Query: 91  IPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLITLTNYIGAGSHSFD 267
           I +  + S  ++ KK C    LR    ILG+L ++   + +   I L   I  G H F+
Sbjct: 185 ISFINIRSWRTIPKKWCVLQVLRYFHRILGHLWLYVGFFESCTGIVLLAGIFKGQHIFN 243


>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 33/135 (24%), Positives = 54/135 (40%)
 Frame = +1

Query: 46  VRIQNIPNFDKMTKPIPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNTGLLI 225
           V I  +P F  ++  IP  +L+     GK+      L I   +LG +    +++  GL +
Sbjct: 250 VYILIMPAFGVVSHIIP--SLAHKPIFGKEGMLWAMLSIA--LLGLMVWSHHLFTVGLDV 305

Query: 226 TLTNYIGAGSHSFDRTTSFDSIDLEELSEPTTTLQPAQQSSESPLLSGVGFVLLMTIVIN 405
               Y  A +      T      ++  S   T    A Q S  P+L  +GF++L TI   
Sbjct: 306 DTRAYFSAATMVIAIPTG-----IKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGL 360

Query: 406 AAWLLVNIACVVGLH 450
              +L N    +  H
Sbjct: 361 TGVILSNSVLDIAFH 375


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = +1

Query: 43   SVRIQNIPNFDKMTKPIPYNTLSSTSSLGKKCCYCFPLRIGCFILGYLTMFTNVYNT-GL 219
            S+R   +P   +MT P    T+  +SS+  +     P  +   +L + +  TN + T   
Sbjct: 3788 SIRDAELPTPSRMTSPSLSETIPQSSSI-SEASTSNPNILSSTVLSFDSTITNSFTTAST 3846

Query: 220  LITLTNYIGAGSHSFDRTTS 279
             I  T  + + S+ +  +T+
Sbjct: 3847 SIMKTTSLNSNSYKWYNSTT 3866


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,685,353
Number of Sequences: 5004
Number of extensions: 50583
Number of successful extensions: 153
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)