Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24a08
         (556 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         27   1.4  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   4.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   5.7  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.9  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   9.9  
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi...    25   9.9  

>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 176 HCREESPILSRRKHYFGGRFELLAWPVFPVRQDS 277
           HCR  SP  +    Y      LLAWP +  + DS
Sbjct: 266 HCRNSSPHDNPILEYLFALVSLLAWPFYRRKLDS 299


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -3

Query: 410 SSRLLLSKLNCSAVIK*IIGVTGLKATFVD*ARAAFRFLGESKSA--SLGVLGRQARPGA 237
           S+ +  S+L+C +    I   T    +F D        L +S+ A  SLG+  R    G+
Sbjct: 152 SNLIETSELSCLSSSPMIRSHTIPSLSFTDQVSTTISTLDKSEQAPSSLGIYYRSPSSGS 211

Query: 236 QISRRNNVCV 207
            I R  +VC+
Sbjct: 212 PIGRTKSVCL 221


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 219 ISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 326
           IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714



 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
 Frame = +3

Query: 87  VHDKELKIEENPRVY---CGRHLANARMVLCYDTVEKRAQS---YLDANIISAGDLSSWP 248
           V + EL IE++ +        + AN  + + Y + ++ ++S   YLDA  I    + +W 
Sbjct: 15  VKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYLDAIKIDEKAVLAWQ 74

Query: 249 GLSSQYAKT 275
           GL + Y  T
Sbjct: 75  GLWNLYEST 83


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 302 RFLGESKSASLGVLGRQARPGAQISRRNNVCVEIRLGS 189
           RF+        GV GR + P   +SR NN+ +  R+ S
Sbjct: 205 RFVDSDFDPDSGV-GRSSSPDQMMSRNNNLNINARMTS 241


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 439 LIFCSVCMCNV*FSFKIVSTNKTL 510
           LI  ++C C +     IV+TNKTL
Sbjct: 109 LILAAIC-CTILIPINIVATNKTL 131


>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 478 KIKHYTCKHYKRSITTGLNKY 416
           KIKH +   Y R I + +NKY
Sbjct: 168 KIKHLSFHAYLRKINSNVNKY 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,092,674
Number of Sequences: 5004
Number of extensions: 39468
Number of successful extensions: 99
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)