Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt24a03
(705 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical pr... 177 8e-45
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 83 2e-16
Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical pr... 76 2e-14
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 53 2e-07
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 44 1e-04
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 36 0.021
U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta... 36 0.028
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ... 31 0.80
Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical ... 29 4.3
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical pr... 27 9.9
>Z99709-4|CAB16855.1| 277|Caenorhabditis elegans Hypothetical
protein C47B2.4 protein.
Length = 277
Score = 177 bits (430), Expect = 8e-45
Identities = 80/176 (45%), Positives = 114/176 (64%)
Frame = +1
Query: 178 FSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKI 357
F F N RN + + G APK T TGTTIV + + G+++GAD+RAT +++DK+C+K+
Sbjct: 21 FDFSNCIRNQAMCKMGGKAPKLTSTGTTIVAVAFKGGLVMGADSRATAGNIIADKHCEKV 80
Query: 358 HYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHI 537
H L ++Y CGAGTAAD + T+ ++ L L L+TGR V TA K+ LF YQG+I
Sbjct: 81 HKLTESIYACGAGTAADLDQVTKMLSGNLRLLELNTGRKARVITALRQAKQHLFNYQGYI 140
Query: 538 GAALVLGGVDRTGPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
GA L++GGVD TGPH+Y +G+ P+ GSGS AA+ + E +K DM ++E
Sbjct: 141 GAYLLIGGVDPTGPHLYMCSANGTTMAFPFTAQGSGSYAAITILERDFKVDMTKDE 196
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 83.0 bits (196), Expect = 2e-16
Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 1/162 (0%)
Frame = +1
Query: 223 GFPAPKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTA 402
GF + TGTT++ + Y GV++G D+R + + ++ + KI + NM C +G+A
Sbjct: 13 GFYPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSA 72
Query: 403 ADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGHIGAALVLGGVD-RTGP 579
ADT+ +++ + + V + ++ + ++ L+ Y+ + A++++ G D G
Sbjct: 73 ADTQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGG 132
Query: 580 HIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
+Y I G V + GSGS ++ W+ ++ EE
Sbjct: 133 QVYAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPNLTLEE 174
>Z81564-1|CAB04567.1| 284|Caenorhabditis elegans Hypothetical
protein K05C4.1 protein.
Length = 284
Score = 76.2 bits (179), Expect = 2e-14
Identities = 47/161 (29%), Positives = 78/161 (48%), Gaps = 8/161 (4%)
Frame = +1
Query: 247 KTGTTIVGIIY-----AD--GVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAA 405
+ GTT + +Y AD G+I+ D+RA+ +S K+ KI + M AG AA
Sbjct: 62 RKGTTTLAFVYEPATPADKGGIIVAVDSRASSGEYISSKSVMKILDIGDRMVATMAGGAA 121
Query: 406 DTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRYQGH-IGAALVLGGVDRTGPH 582
D + T+ VA L L ++ V A+ L+ Y+G + ++ G D+ GP
Sbjct: 122 DCQFWTRIVAKYCTLYELREKTSITVSAASKYFANTLYGYRGQGLSVGSMVAGYDKKGPQ 181
Query: 583 IYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
I+ + G +L ++GSGSL A + + +K M ++E
Sbjct: 182 IFKVDSEGDRCQLKVCSVGSGSLNAYGILDNHYKPKMTDDE 222
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 53.2 bits (122), Expect = 2e-07
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 3/155 (1%)
Frame = +1
Query: 250 TGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQS 429
TG T+V + + V + +D R E + +K+H + +Y AG +D +
Sbjct: 7 TGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDARTVLEK 66
Query: 430 VASQLELQRLHTGRTVPVETAATLLKRMLF--RYQGHIGAALVLGGVDRTGPHIYCIYPH 603
+ + L L R + + + ++ + + R+ + LV G D P+I C+
Sbjct: 67 IMFRKNLYELRENRNIKPQVLSEMISNLAYQHRFGSYFTEPLVAGLDDTNKPYICCMDTI 126
Query: 604 GSVD-KLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
G V + +G+G + V E W+ +M +E
Sbjct: 127 GCVSAPRDFVAVGTGQEYLLGVCENFWRENMKPDE 161
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 44.8 bits (101), Expect = 6e-05
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 9/148 (6%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A K G+T +GI ++GV+L A+ R+T +V+D +KI + ++ AG AD+
Sbjct: 27 AIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDA-IEKISKVDQHIGVTFAGLIADS 85
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY---------QGHIGAALVLGGV 564
+ + + R + VE + + ++ G A++ GV
Sbjct: 86 RTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFGVAMLFAGV 145
Query: 565 DRTGPHIYCIYPHGSVDKLPYATMGSGS 648
D+ G ++ + P G+ ++G+ S
Sbjct: 146 DQEGAKLFHLDPSGTFIDCKAKSIGAAS 173
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 44.0 bits (99), Expect = 1e-04
Identities = 38/163 (23%), Positives = 68/163 (41%), Gaps = 6/163 (3%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A T +GI+ ++G+++ A+ + + +K++ L+ N+ C AG AD
Sbjct: 24 AMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCTVAGITADA 83
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDR-T 573
+ + R G +PVE L RY + G +L+ G D+
Sbjct: 84 NILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLLYIGWDKHY 143
Query: 574 GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEE 702
G +Y P G+ +GS AA+ + + +K EE
Sbjct: 144 GYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYKSPNLEE 186
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 43.6 bits (98), Expect = 1e-04
Identities = 33/164 (20%), Positives = 68/164 (41%), Gaps = 6/164 (3%)
Frame = +1
Query: 232 APKATKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADT 411
A +A K G+T VG+ D +++G + ++ + D+ +KIH + ++ AG +AD
Sbjct: 23 AQEAVKKGSTAVGVRGKDCIVIGVEKKSIP-ALQDDRTIRKIHMIDDHVMLAFAGLSADA 81
Query: 412 EMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY-----QGHIGAALVLGGVDRTG 576
+ + + +L V V + + R+ + G ++++GG D G
Sbjct: 82 RVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDG 141
Query: 577 -PHIYCIYPHGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
P ++ P G+ + G G E + + +E
Sbjct: 142 TPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDE 185
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 36.3 bits (80), Expect = 0.021
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 9/175 (5%)
Frame = +1
Query: 175 GFSFENFQRNAFLAQKGFPAPKATKTGTTIVGIIYADGVILGADTRATEN--TVVSDKNC 348
GFS F + L Q + A A K G VG+ DGV+L ATEN +V++D
Sbjct: 6 GFSLTTFSPSGKLMQIEY-ALNAVKNGQPSVGLRAKDGVVL-----ATENVGSVLTDDQ- 58
Query: 349 QKIHYLASNMYCCGAGTAADTEMTTQSVASQLELQRLHTGRTVPVETAATLLKRMLFRY- 525
K+ ++ ++ C +G D + + + G +P T + ++ Y
Sbjct: 59 PKVEQISKHIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYT 118
Query: 526 -QGHI---GAALVLGGVDRT--GPHIYCIYPHGSVDKLPYATMGSGSLAAMAVFE 672
G + GA+L++ G D+ P ++ P G+ +G + A E
Sbjct: 119 QSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLE 173
>U80442-1|AAB37663.1| 202|Caenorhabditis elegans Proteasome beta
subunit protein 4 protein.
Length = 202
Score = 35.9 bits (79), Expect = 0.028
Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 7/155 (4%)
Frame = +1
Query: 262 IVGIIYADGVILGADTRA-TENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTTQSVAS 438
+VGI + VIL AD +++D K + L + G D
Sbjct: 7 LVGISTENYVILAADKATFAYGAILADSENDKEYRLGKKLTMMCIGEEGDVAQFGDWTKR 66
Query: 439 QLELQRLHTGRTVPVETAATLLKRML---FRYQGHIGAALVLGGVDRTGPHIYC---IYP 600
L+L + G V A ++R + R Q H +++GG D + Y
Sbjct: 67 NLQLYSVRNGYEVSPSCAHHFVRRSIAEGLRSQDHYTVDVLIGGYDDKEDKAFLGSVDYL 126
Query: 601 HGSVDKLPYATMGSGSLAAMAVFEAGWKRDMNEEE 705
+ + PY G A+ + +K+DM E E
Sbjct: 127 ANGLGQQPYLFRGFCGRFCYAIMDREYKKDMTEAE 161
>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
protein Y39D8B.1 protein.
Length = 1372
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 359 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 219
WIF L + ++S P I A + P +VP++++ G G PF
Sbjct: 687 WIFVPVLVSPRILGAVILS-PVIMSPAILTPLCMVPIILSPGVGLPF 732
>Z77661-2|CAB01184.4| 265|Caenorhabditis elegans Hypothetical
protein F40G12.2 protein.
Length = 265
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = +1
Query: 328 VVSDKNCQKIHYLASNMYCC 387
V S +NC+K+H+L+SN + C
Sbjct: 210 VKSQENCEKVHFLSSNFWNC 229
>AC006749-2|AAF60533.3| 731|Caenorhabditis elegans Hypothetical
protein Y39D8B.3 protein.
Length = 731
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -2
Query: 359 WIFWQFLSETTVFSVALVSAPRITPSAYIIPTIVVPVLVALGAGNPF 219
W+F L + A+V +P + + P +VPV+++ G G PF
Sbjct: 596 WVFVPVLVSPRILG-AVVLSPIVFSPVILSPLCLVPVILSPGVGLPF 641
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Frame = +1
Query: 244 TKTGTTIVGIIYADGVILGADTRATENTVVSDKNCQKIHYLASNMYCCGAGTAADTEMTT 423
T TGT+++ + Y GV++ D + + KN + + + N+ G AD
Sbjct: 14 TCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHWLQ 73
Query: 424 QSVASQLEL 450
+ Q+ L
Sbjct: 74 NVIERQVLL 82
>Z99171-7|CAB16312.1| 188|Caenorhabditis elegans Hypothetical
protein F47G4.8 protein.
Length = 188
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 270 TNNCSTGLGGFGCRKP 223
T+ CS GLGGFG +P
Sbjct: 96 TSQCSPGLGGFGVYRP 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,310,513
Number of Sequences: 27780
Number of extensions: 343435
Number of successful extensions: 933
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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