Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24a02
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0049 - 20277234-20277251,20277670-20277795,20278085-202781...    29   2.3  
04_02_0011 - 8513471-8513673,8513815-8513869                           29   3.1  
09_04_0350 + 16899076-16900164                                         28   5.4  
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259...    27   7.2  
05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802     27   7.2  
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858...    27   9.5  
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333...    27   9.5  

>03_05_0049 -
           20277234-20277251,20277670-20277795,20278085-20278153,
           20278233-20278280,20278413-20278494,20278583-20278662,
           20278764-20278835,20278912-20279006,20280396-20280477,
           20280604-20280963
          Length = 343

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 78  RLSLNLPPVVPAVGEAGTMAQSTLGYLHGSHPLPGTRSGLLAPPSV 215
           RL+++ P  VP    A  MA +  GY      LPG+  GL A  S+
Sbjct: 35  RLNVHAPEFVPRSPAASPMAAAAAGYYSPFLQLPGSSIGLGADWSI 80


>04_02_0011 - 8513471-8513673,8513815-8513869
          Length = 85

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +2

Query: 194 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 331
           AP T +   C+D T K +C+     +  C     L YCN   C+ +P
Sbjct: 33  APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77


>09_04_0350 + 16899076-16900164
          Length = 362

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 21/41 (51%), Positives = 22/41 (53%)
 Frame = -3

Query: 202 ARSPLRVPGSGCDPWRYPRVDCAIVPASPTAGTTGGRLRDS 80
           AR P  V  SG + WR  R D A   AS TAG  GGR R S
Sbjct: 71  ARRPWLV-SSGAEAWRR-RGDAASA-ASATAGGAGGRSRRS 108


>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
            2590301-2590606,2590698-2590912,2591461-2591755,
            2591901-2592065,2592142-2592738,2593029-2593115,
            2593203-2593523,2594047-2596071
          Length = 1477

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 240  LVVQSRQVLPMVVQGAHCGYQGADAIHGGIQGLT 139
            L ++ RQ  P+V+ G  C ++G D I  GI G T
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI--GIVGRT 1265


>05_04_0354 - 20545574-20545627,20546430-20546754,20547219-20547802
          Length = 320

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 199 RSPLRVPGSGCDPWRYPRVDCAIVPASPTAG 107
           R P ++P     P+ +PR D A+ P+SP  G
Sbjct: 40  RQPAKIPA----PFVWPRADVALPPSSPPTG 66


>11_03_0107 +
           10084234-10084348,10084830-10084834,10085351-10085803,
           10086143-10086267,10087282-10087345,10087452-10087508,
           10088475-10088485,10089923-10090802
          Length = 569

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +2

Query: 230 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEGCEPASGASVA 370
           C+T +  T +G I  A     P+L  P CN    +A  +  CEP  GA+++
Sbjct: 31  CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANLS 81


>01_06_1227 +
           35531840-35532516,35532665-35532836,35533158-35533357,
           35533467-35533622,35536878-35537235,35537407-35537418
          Length = 524

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 91  TCHRWCRRLGRLEQWRSQPLDTSMDR 168
           TC R  RR    ++WR QP D SM R
Sbjct: 201 TCMRNGRRDDTYQKWRWQPKDCSMPR 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,260
Number of Sequences: 37544
Number of extensions: 292315
Number of successful extensions: 946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)