Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt24a01
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    25   0.63 
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    25   0.63 
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    25   0.63 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   5.9  

>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
 Frame = -2

Query: 592 HFLCPFEIS*G---HG------HDQLSCSITLSLADCLQTHKSYSSFLFHPRLYWKL 449
           H +CP  +S G   HG      H +LSC       DCL+      S  F  ++Y+ L
Sbjct: 62  HDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNL 118


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
 Frame = -2

Query: 592 HFLCPFEIS*G---HG------HDQLSCSITLSLADCLQTHKSYSSFLFHPRLYWKL 449
           H +CP  +S G   HG      H +LSC       DCL+      S  F  ++Y+ L
Sbjct: 67  HDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNL 123


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
 Frame = -2

Query: 592 HFLCPFEIS*G---HG------HDQLSCSITLSLADCLQTHKSYSSFLFHPRLYWKL 449
           H +CP  +S G   HG      H +LSC       DCL+      S  F  ++Y+ L
Sbjct: 67  HDMCPDVMSAGESKHGLTNTASHTRLSCDCDDKFYDCLKNSADTISSYFVGKMYFNL 123


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = -1

Query: 146 NQSFMWLLMADAVLFLFRPVNYC*VIF*V*CKPIQ 42
           N+   W++     +FL   +NY  V F +   P++
Sbjct: 371 NRGLXWIISDRMPVFLLXTLNYTDVXFRILTMPVR 405


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,244
Number of Sequences: 438
Number of extensions: 2681
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)