Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p19
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    28   0.83 
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   1.5  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    27   1.9  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    27   1.9  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.4  
SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr 2|||Ma...    26   4.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.4  

>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 203 DLESIINQIFTSAKPPTQLQPVTQPSVADRAPSTLVPGVSTNDDLSCQTSDGQEGEC 373
           D ESI   +F S K  T++ PV+     + AP    P +S   +L   T+   E +C
Sbjct: 731 DKESIFGSLFGSKKKQTEIPPVSSSPPHNDAPPKAKP-ISAPSELP-NTTSVAEAKC 785


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 372 HSPSWPSEVWHERSSFVETPGTRVDGALSAT 280
           HS ++P+E+W  R    E P  + D  L+ T
Sbjct: 45  HSLTFPTEIWETRDGLFEEPVGKGDSHLNHT 75


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 351 PTAKKGSASTITCAMRPITPLSLTEQTSSI*ESAVARVHRTST 479
           P     + +T TC+ RP   +S    TS++ ES  +    TST
Sbjct: 567 PEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 131 YPKMYKLLFIGFLASACAQNMDTGDLESIINQIFTSAKPPTQLQ-PVTQPSVADRAPSTL 307
           YP  Y    +   A++ +  +         N  F +  P + LQ P T  S   + P ++
Sbjct: 372 YPISYAAESVPRPATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVPQLPKSV 431

Query: 308 VPGVSTNDDLSCQTSD 355
            PG++   D S  +S+
Sbjct: 432 TPGLAYPHDSSMLSSN 447


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 291 GLHRPWCL 314
           GLHRPWCL
Sbjct: 685 GLHRPWCL 692


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 403  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 287
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


>SPBC8E4.03 |||agmatinase 2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 433 DVCSVSDNGVIGRIAQVIVDALPFLAV 353
           ++  +  NG++ RI QV+ D L +L++
Sbjct: 304 EIDEIGVNGIVERIKQVVGDTLVYLSI 330


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 403  IGRIAQVIVDALPFLAVGGLARKVIVRRDARHQGRWSPI 287
            +GR+A+V++D    L   G A +  + R +R  G ++P+
Sbjct: 1313 LGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYAPL 1350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,602
Number of Sequences: 5004
Number of extensions: 37366
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)