Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p13
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    38   0.001
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.1  
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    28   1.5  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   1.9  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.4  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 429 DSTVTGLLPGNFKVDCD---EAVGYLAVYRITFATCLFFLLMALIMIGVKSSKDPRAGIQ 599
           +S ++ L  G  + DC    +    +AV+R++F   +F L +A I+    +       IQ
Sbjct: 67  NSKLSKLSAGYLQFDCQNDGKCYSVIAVHRLSFTLVMFHLFLAFILSLCNTRSRVAIKIQ 126

Query: 600 NGFWAIKYLLVIGGIIGAFFHPRR 671
           NG W  K +L     I +FF P +
Sbjct: 127 NGLWPFKIVLWFVLGIFSFFIPTK 150


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 119 ILILLNAHKNIQLQIF*ICH*TQQNSEFVTAMEL 18
           +L +LN H   QL++F +CH    NSEF   + L
Sbjct: 711 LLTILNLHDRSQLKLFEVCH----NSEFKDPINL 740


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -1

Query: 674 DPPGMKECSDNATNNQ*IFDGPKTILNSS 588
           D P +K+ +D    N  + DGP++I+NS+
Sbjct: 246 DLPFIKDYNDYGDENNWLIDGPQSIINSA 274


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = -2

Query: 307 ELVQDGHAEQHSE---QAVLPQQHASCAAEQRPNTAPISSF 194
           +L+ D  A QH     Q  +P   AS +    P  AP+SSF
Sbjct: 174 KLLPDQSARQHQVLVGQTAIPTSEASSSINNTPLQAPVSSF 214


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +2

Query: 65  KSKKSATEYFYVRLIISKYRYLLLGM*IVVHKTDNTINTK*ELKTRNGCS 214
           K  K+ TE  Y+R +IS+   + L M +++HK    I+   E   RN  S
Sbjct: 404 KLYKTTTE-MYLRQVISRMPPVSLEMQVLLHKQTQLIDLLLESSLRNSLS 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,861,565
Number of Sequences: 5004
Number of extensions: 59561
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)