Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p07
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    38   0.002
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    29   0.48 
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    26   4.5  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   4.5  
SPAC5H10.09c |||3-methyl-2-oxobutanoatehydroxymethyltransferase|...    26   5.9  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    25   7.9  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    25   7.9  

>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261 IVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQA 440
           +++LDGG ST +   +   I    LW++  +  +P  VV  H +FL+   D+I T TYQ 
Sbjct: 1   MLMLDGG-STAILPKLPESISESRLWTSEALVRYPEIVVKHHEEFLKV-CDIISTFTYQL 58

Query: 441 SVEGFVEHL-GVTKEQGY 491
               + E + GV  +Q Y
Sbjct: 59  DASIYDEKVEGVPLKQVY 76


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 498 LIHNLVLSLLPDALRSLPLKLGMYW 424
           L H++++SLLPD +R+L LK   Y+
Sbjct: 214 LYHSMIISLLPDGIRNLFLKAISYF 238


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 8/14 (57%), Positives = 13/14 (92%)
 Frame = -3

Query: 404 GSQKIEMRIDNFVW 363
           GS+ +E+R+DN+VW
Sbjct: 28  GSKNLEVRMDNYVW 41


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 297 SCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAG 407
           SCH G  +D    +S + +   PN +  + +D L AG
Sbjct: 269 SCHSGGALDLPFTYSTKGVLKEPNMLKESGMDVLHAG 305


>SPAC5H10.09c
           |||3-methyl-2-
           oxobutanoatehydroxymethyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 346 RALHSGSPSMTCPTWQDSCVENPPSSTTMCGASVFSLLGG 227
           R L +  P M+  TW+D+C     ++    GA++  + GG
Sbjct: 81  RLLMADLPFMSYSTWEDAC--KNAATVMRAGANIVKIEGG 118


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 513 QLAKQARTLYLEEYRDYVQNDDIPLIVG 596
           ++A +A  +     RDYVQN+DI  + G
Sbjct: 19  KIATEAGHIVYNVVRDYVQNEDIEKVHG 46


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 272 QHNYVRSFCILAARWSHRSSF 210
           +H   R  CI  A+W HR+ F
Sbjct: 30  EHKAFRKACIEFAQWMHRAEF 50


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,010
Number of Sequences: 5004
Number of extensions: 63777
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)