Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p07
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1048 + 25675563-25675760,25676995-25677051,25677132-256773...   125   3e-29
10_08_0045 + 14407892-14408068,14408759-14408815,14408899-144091...   109   2e-24
03_02_0194 + 6322499-6322654,6323540-6323596,6323702-6323907,632...   106   1e-23
01_06_0875 - 32650150-32650350,32650464-32650788,32650872-326510...   103   1e-22
04_04_0261 + 24007790-24009098,24009191-24011118                       31   0.66 
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153     31   1.1  
08_02_0219 + 14407834-14408083,14409100-14409209,14409609-144096...    28   6.1  
01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168     28   6.1  

>12_02_1048 +
           25675563-25675760,25676995-25677051,25677132-25677331,
           25677412-25677541,25677642-25677845,25678017-25678088,
           25678379-25678546
          Length = 342

 Score =  125 bits (302), Expect = 3e-29
 Identities = 59/143 (41%), Positives = 99/143 (69%)
 Frame = +3

Query: 264 VVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQAS 443
           +V+DGG +T+L  +   +   DPLWSA+ + + P+ V   HLD+L AGA++IIT +YQA+
Sbjct: 30  LVMDGGLATELEANGADL--NDPLWSAKCLLSSPHLVRKVHLDYLEAGANIIITASYQAT 87

Query: 444 VEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 623
           ++GF E  G +KEQ  +L+A++V++A++AR ++L+E+ D      I L+  S+G YGA+L
Sbjct: 88  IQGF-ESKGFSKEQSEDLLAKSVEIAREARDMFLKEHSDRPIQHPI-LVAASIGSYGAYL 145

Query: 624 HDGSEYDGSYADTTSIXTMREWH 692
            DGSEY G Y +  ++  ++++H
Sbjct: 146 ADGSEYSGDYGEAGTLEFLKDFH 168


>10_08_0045 +
           14407892-14408068,14408759-14408815,14408899-14409125,
           14409271-14409400,14409848-14410051,14410127-14410198,
           14410468-14410608
          Length = 335

 Score =  109 bits (262), Expect = 2e-24
 Identities = 59/150 (39%), Positives = 92/150 (61%), Gaps = 8/150 (5%)
 Frame = +3

Query: 267 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 446
           V+DGG +T+L  +   + D   LWSAR + T P+ +   HLD+L AGA ++IT +YQA++
Sbjct: 24  VIDGGLATELEANGADLKDA--LWSARCLFTCPDLIRKVHLDYLEAGASVLITGSYQATI 81

Query: 447 EGFVEHLGVTKEQGYELIARAVQLAKQARTLYLE-------EYRDYVQNDDIP-LIVGSV 602
           +GF+   G ++E+    + R+V+LA +AR +YLE       E +D  +    P LI  SV
Sbjct: 82  QGFLSK-GFSQEESESFLRRSVELACEARAIYLEKCSNGSDEAKDVTKYRKRPILIAASV 140

Query: 603 GPYGAHLHDGSEYDGSYADTTSIXTMREWH 692
           G YGA+L DGSEY G Y +  ++  ++ +H
Sbjct: 141 GSYGAYLADGSEYSGDYGNEGTLEFLKNFH 170


>03_02_0194 +
           6322499-6322654,6323540-6323596,6323702-6323907,
           6324028-6324157,6324285-6324488,6324599-6324670,
           6324844-6325008
          Length = 329

 Score =  106 bits (255), Expect = 1e-23
 Identities = 56/143 (39%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +3

Query: 267 VLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITNTYQASV 446
           V+DGGF+TQL   +G  I+ DPLWSA  + T P+ +   H+ +L AGAD+II+++YQA++
Sbjct: 17  VIDGGFATQLEA-LGADIN-DPLWSAACLITKPHLIKEVHMQYLEAGADVIISSSYQATI 74

Query: 447 EGFVEHLGVTKEQGYELIARAVQLAKQAR-TLYLEEYRDYVQNDDIPLIVGSVGPYGAHL 623
            GF+   G+  E+   L+ R+++LA +AR   +    R      +  L+  S+G YGA+L
Sbjct: 75  PGFLAR-GMLLEEAEGLLRRSIELALEARDEFWKSTLRKSKPVYNRALVAASIGSYGAYL 133

Query: 624 HDGSEYDGSYADTTSIXTMREWH 692
            DGSEY GSY +  +   ++++H
Sbjct: 134 ADGSEYSGSYGEDITAEKLKDFH 156


>01_06_0875 -
           32650150-32650350,32650464-32650788,32650872-32651092,
           32651187-32651243,32651333-32651515
          Length = 328

 Score =  103 bits (248), Expect = 1e-22
 Identities = 55/154 (35%), Positives = 93/154 (60%), Gaps = 6/154 (3%)
 Frame = +3

Query: 249 EAPHIVVLDGGFSTQLSCHVGHVIDGDPLWSARFIHTHPNEVVNTHLDFLRAGADLIITN 428
           EA    V+DGG +T+L  H   +   D LWSA  + + P+ +   HLD+L AGA++I + 
Sbjct: 20  EAGGCAVVDGGLATELEAHGADL--HDELWSASCLVSAPHLIRKVHLDYLDAGANIITSA 77

Query: 429 TYQASVEGFVEHLGVTKEQGYELIARAVQLAKQARTLYLEEYR--DYVQNDDIP----LI 590
           +YQA+++GF +  G+++E+   L+ R+V +A++AR ++ E +    Y  +   P    L+
Sbjct: 78  SYQATIQGF-QARGLSRERSEALLRRSVHIAQEARAIFAEGWSKGPYANHRSSPRRPVLV 136

Query: 591 VGSVGPYGAHLHDGSEYDGSYADTTSIXTMREWH 692
             S+G YGA+L DGSEY G Y  + +  T++ +H
Sbjct: 137 AASIGSYGAYLADGSEYTGDYGISVTKETLKSFH 170


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = -1

Query: 430 VLVMIKSAPALKKSRCVLTTSFGCVWIKRALHSGSPSMTCPTWQ---DSCVENPPSSTTM 260
           +L+++  A A   SRC    +   + +KR+ H     +  P+W+   D C+    S    
Sbjct: 17  ILLLLVQATAAATSRCPAQQAAALLRLKRSFHHHHQPLLLPSWRAATDCCLWEGVSCDAA 76

Query: 259 CGASVFSL-LGGVIVRAFCPDLSGLKCFQI 173
            G  V +L LGG  V +    L G   FQ+
Sbjct: 77  SGVVVTALDLGGHGVHS-PGGLDGAALFQL 105


>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
          Length = 1112

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = +3

Query: 216 RTMTPPSSENTEAPHIVVLDGGFSTQLSCHVGHVID--GDPLWSARFIHTHPNEVVNTHL 389
           +T+   +  NT+ P +VV+  G   QLS +   ++D  G  LW+ +        +++T  
Sbjct: 71  KTLAWYAKTNTQVPELVVVPSGSRLQLSSNGLSLLDPGGHELWNPQVTSAAYANMLDTG- 129

Query: 390 DFLRAGAD 413
           +F+ AGAD
Sbjct: 130 NFVLAGAD 137


>08_02_0219 +
           14407834-14408083,14409100-14409209,14409609-14409656,
           14409812-14409886,14409991-14410102,14410414-14410465,
           14410550-14410601,14410767-14410824,14411094-14411192,
           14411299-14411429
          Length = 328

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/81 (24%), Positives = 36/81 (44%)
 Frame = -1

Query: 421 MIKSAPALKKSRCVLTTSFGCVWIKRALHSGSPSMTCPTWQDSCVENPPSSTTMCGASVF 242
           M+ + P +  S+ +LT+      I RAL + +   TCP     C  +P  S+   G ++ 
Sbjct: 11  MVAARPCISASQGMLTSRAAVSRIGRALSTTTGFATCPR---ICYSSPLGSSKRSGVAIR 67

Query: 241 SLLGGVIVRAFCPDLSGLKCF 179
           ++      +    DL G + F
Sbjct: 68  AMSSESGPQGLPIDLRGKRAF 88


>01_07_0094 - 41049644-41050214,41050441-41050688,41050887-41051168
          Length = 366

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 362 MCVDKTSTPQWI-TVDDMPDVARQLCREPTVQHNYVR 255
           +C +K S    I  VDD+ ++ R+LC   TV   Y+R
Sbjct: 8   VCAEKASEIIKIGQVDDVQELQRRLCSATTVPERYIR 44


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,796,912
Number of Sequences: 37544
Number of extensions: 424792
Number of successful extensions: 1117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)