Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p07
         (694 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    25   0.90 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    25   0.90 
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   2.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   2.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 245 YRSSAHSCAGRWVLDTAVL 301
           YR     C   W+LDT +L
Sbjct: 124 YRMQVDKCGRLWILDTGIL 142


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 245 YRSSAHSCAGRWVLDTAVL 301
           YR  A SC   WVLDT  +
Sbjct: 131 YRIHADSCDRLWVLDTGTI 149


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 430 VLVMIKSAPALKKSRCVLTTSFGCV 356
           +L M ++ PA   S+C LTT   C+
Sbjct: 151 LLPMNRNRPAYLASKCALTTLTDCL 175


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 320 RR*STVECSFYPHTSKRSCQ 379
           R  S +EC+  P +S  SCQ
Sbjct: 367 RNGSMIECNISPRSSADSCQ 386


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 218 SSFLSRFVGLKMFSNLYSAFQKI 150
           SSF+ R +G ++  ++YS F  I
Sbjct: 116 SSFMERMIGWEIGCDVYSVFGSI 138


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -3

Query: 218 SSFLSRFVGLKMFSNLYSAFQKI 150
           SSF+ R +G ++  ++YS F  I
Sbjct: 116 SSFMERMIGWEIGCDVYSVFGSI 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,594
Number of Sequences: 438
Number of extensions: 4584
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)