Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23p06
(649 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 26 0.27
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 25 0.83
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 1.9
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 23 2.5
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 23 2.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 23 2.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 23 2.5
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 23 2.5
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 23 2.5
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 23 2.5
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 23 2.5
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 23 2.5
AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine rece... 23 3.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.8
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 21 7.8
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 21 7.8
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 26.2 bits (55), Expect = 0.27
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 41 YDRYNKINNK*GNYHSKNFYLLMFL 115
Y YN NN NY+ K +Y + ++
Sbjct: 91 YSNYNNYNNNYNNYNKKLYYNINYI 115
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 24.6 bits (51), Expect = 0.83
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 5 VVKVMNFYHLLTYDRYNKINNK*GNYHSKNFY 100
+ + N Y Y+ YN NN N ++K Y
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLY 346
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 23.4 bits (48), Expect = 1.9
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +2
Query: 41 YDRYNKINNK*GNYHSKNFYLLMFL 115
Y+ YN NN N + K +Y + ++
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYI 358
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +2
Query: 41 YDRYNKINNK*GNYHSKN 94
Y YN NN NY++ N
Sbjct: 324 YSNYNNYNNNYNNYNNYN 341
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 450 QAAITYGSLTDTHTISATPSDFSLSAF 370
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 450 QAAITYGSLTDTHTISATPSDFSLSAF 370
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 450 QAAITYGSLTDTHTISATPSDFSLSAF 370
Q AITY D T+ +PS SL+A+
Sbjct: 262 QTAITYVWKNDEGTLRKSPSLTSLNAY 288
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 450 QAAITYGSLTDTHTISATPSDFSLSAF 370
Q AITY D T+ +PS SL+A+
Sbjct: 211 QTAITYVWKNDEGTLRKSPSLTSLNAY 237
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Frame = +2
Query: 5 VVKVMNFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 115
+ + N Y Y+ YN N NY +Y + ++
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Frame = +2
Query: 5 VVKVMNFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 115
+ + N Y Y+ YN N NY +Y + ++
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Frame = +2
Query: 5 VVKVMNFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 115
+ + N Y Y+ YN N NY +Y + ++
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.0 bits (47), Expect = 2.5
Identities = 9/37 (24%), Positives = 16/37 (43%)
Frame = +2
Query: 5 VVKVMNFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 115
+ + N Y Y+ YN N NY +Y + ++
Sbjct: 82 ISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNINYI 118
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 23.0 bits (47), Expect = 2.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 2 KVVKVMNFYHLLTYDRYNKINNK*GNYHSKNFYLLMFL 115
K + N Y+ Y+ YN NN NY K +Y + ++
Sbjct: 88 KTIHNNNNYNNNNYNNYNYNNNNYNNY-KKLYYNINYI 124
>AY921573-1|AAX62923.1| 694|Apis mellifera D2-like dopamine
receptor protein.
Length = 694
Score = 22.6 bits (46), Expect = 3.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +3
Query: 492 PIPAATSSRLWTWAPICRRSEVSAPKGSRWS 584
P+P A + + + + C++ + +A GSR++
Sbjct: 564 PLPLARTPSVMSASSTCKKDKKNAGSGSRFT 594
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.9
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -2
Query: 387 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 289
+ S T+ G C+ PG+ + T+FP
Sbjct: 87 YQTSVVVTHDGSCLYVPPGIFKSTCKIDITWFP 119
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Frame = -2
Query: 387 FSLSAFCTYPGKCVLEHPGVKAPGTANNTTFFP 289
+ S T+ G C+ PG+ + T+FP
Sbjct: 87 YQTSVVVTHNGSCLYVPPGIFKSTCKIDITWFP 119
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +2
Query: 41 YDRYNKINNK*GNYHSKNF 97
Y YN NN N ++ N+
Sbjct: 91 YSNYNNYNNNYNNNYNNNY 109
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 21.4 bits (43), Expect = 7.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = +2
Query: 41 YDRYNKINNK*GNYHSKNF 97
Y YN NN N ++ N+
Sbjct: 91 YSNYNNYNNNYNNNYNNNY 109
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,860
Number of Sequences: 438
Number of extensions: 4086
Number of successful extensions: 23
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -