Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23p05
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 45 1e-05
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 33 0.053
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 32 0.070
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 31 0.12
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 31 0.16
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.21
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 29 0.49
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|... 29 0.49
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 29 0.49
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.65
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.65
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.65
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 29 0.86
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 29 0.86
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 29 0.86
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 28 1.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 27 2.0
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 27 2.0
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 2.6
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 2.6
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 2.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.6
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 2.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 27 3.5
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 3.5
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 26 4.6
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 6.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 6.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 6.1
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 26 6.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 25 8.0
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 8.0
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 25 8.0
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 25 8.0
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 44.8 bits (101), Expect = 1e-05
Identities = 26/92 (28%), Positives = 41/92 (44%)
Frame = +1
Query: 238 LHESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRD 417
L +P P + TNTN +N Y +Q Q +++ + H + S+ NG R
Sbjct: 143 LQRDTSVPPAPSMVHPHTNTNANSNNLKVYANQLSQQNTSNPTYHNAYDMASMMKNGSRM 202
Query: 418 YVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSS 513
S TTP P + T + S + +PSS+
Sbjct: 203 NNSFPPTTPYPPANDTTVNSSLPHSFASPSST 234
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 32.7 bits (71), Expect = 0.053
Identities = 23/77 (29%), Positives = 33/77 (42%)
Frame = +1
Query: 325 YNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNP 504
YNS F +LGS H + L+ +GK + + + +G T I S R+ H P
Sbjct: 87 YNSDFTRLGSCHSRVPQIKEGELLRISGKEISIEKEISAESYEAG-THIDDSLRDV-HMP 144
Query: 505 SSSTRGITPLSPTTKVQ 555
+ PL P T Q
Sbjct: 145 EMKRKFKPPLRPNTMYQ 161
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 32.3 bits (70), Expect = 0.070
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 7/121 (5%)
Frame = +1
Query: 307 TNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDY--VSPQFTTPKPSSGQTLIPQS 480
T+ ++ Y P L T+ LQ + + D S T+P PS+ ++ S
Sbjct: 55 THSRHRYPETPPSLPPPPSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPS 114
Query: 481 T---RNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHFYDGK--SKDQNAPQPIP 645
T ++ +H+ SSS+ ++P SPT+ G D ++G +DQ P IP
Sbjct: 115 TAASQHHHHHSSSSSYAVSPTSPTSPTSSG--PIGSNFDSASEHNGPVYPQDQQGPVIIP 172
Query: 646 S 648
+
Sbjct: 173 N 173
Score = 29.5 bits (63), Expect = 0.49
Identities = 30/143 (20%), Positives = 45/143 (31%), Gaps = 1/143 (0%)
Frame = +1
Query: 271 KRDNLPTNTNIETNGK-NNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPK 447
K D+ P+ + +T G + S LG S H + R +P P
Sbjct: 12 KLDSYPSFSRSDTQGSIKSLKSLKTVLGKGKDSNHDRRTSTDTTHSRHRYPETPPSLPPP 71
Query: 448 PSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHFYDGKSKDQN 627
PS G + + S +P SP QP + H + S
Sbjct: 72 PSPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAMLSPSTAASQ-HHHHHSSSSSY 130
Query: 628 APQPIPSYSSILQGTGNNNFPTS 696
A P S G +NF ++
Sbjct: 131 AVSPTSPTSPTSSGPIGSNFDSA 153
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 31.5 bits (68), Expect = 0.12
Identities = 27/105 (25%), Positives = 44/105 (41%)
Frame = +1
Query: 346 LGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGI 525
L S KSQ T+ S S+G R PQ T P+S + ++P + H+ S
Sbjct: 526 LRSFSKSQKEETSSNSSNSSGTRRLGLPQRAT--PASRERVLPYTRSQAFHSTSLPPSLP 583
Query: 526 TPLSPTTKVQPNHQTTGKVKDLIHFYDGKSKDQNAPQPIPSYSSI 660
+ SP+ + + +KD ++ Q + I S SS+
Sbjct: 584 SGHSPSIAIPSKRSVSATIKDESKTFELLKNIQRKYELILSGSSV 628
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 31.1 bits (67), Expect = 0.16
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Frame = +1
Query: 355 THKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIP---QSTRNPN 495
TH + ++ +QS++S ++ YV+P+ + KP G++L +T+N N
Sbjct: 393 THLANDISSEKQSIKSANEKAYVTPKSNSLKPGFGKSLSDISNSATKNEN 442
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 30.7 bits (66), Expect = 0.21
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 22/199 (11%)
Frame = +1
Query: 178 PNTGREHNKNYNPILNTDFLLHESG-GIPNTP--KRDNLPTNTNIETNGKNNYN----SQ 336
P G NK I TD + N+P + P+NT+ +N +N+ N
Sbjct: 244 PANGAPTNKPSTDINTTDPATQTTQVSASNSPALSGSSTPSNTSSRSNRQNHGNFSEKRH 303
Query: 337 FPQLGSTHKSQHTNTNQQ-----SLQSNGKRDYVSPQFTTPKPS-SGQTLIP-------Q 477
+ + G++H S + ++ Q + N + + P+F + + + Q P
Sbjct: 304 YDRYGNSHPSYNKYSHYQHGFNYNNSGNNRNESGHPRFRNSRRNYNNQGAYPTYMSNGRS 363
Query: 478 STRNPNHNPSSSTRGITPLS-PTTKVQPNHQTTGKVKDLIHFYDGKSKDQNAPQPIPSYS 654
+ ++P +NP + G TP+ P + P Q G+ + ++ + P +P Y
Sbjct: 364 ANQSPRNNPQNVNNGSTPIQIPVSLQTPYGQVYGQPQYIVDPNMVQYGPILQPGYVPQYY 423
Query: 655 SILQGTG-NNNFPTSGSVG 708
+ T NFP G
Sbjct: 424 PVYHQTPYTQNFPNMSRSG 442
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 29.5 bits (63), Expect = 0.49
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 4/135 (2%)
Frame = +1
Query: 238 LHESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRD 417
LHE+ G+ T +L ET K N Q Q T + +Q L S
Sbjct: 404 LHENMGVMRTRMMRSLG-----ETMSKYNGLIQALQKLQTCMRLNDALIEQRLSSTYAHH 458
Query: 418 YVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPL----SPTTKVQPNHQTTGKVK 585
Y+ + + + + + RN + P +S+ + + SP T+ P+H K
Sbjct: 459 YIDSSMDSNRSIEPEPDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMGQK 518
Query: 586 DLIHFYDGKSKDQNA 630
D I Y D +A
Sbjct: 519 DTISSYYSTDTDVSA 533
>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1369
Score = 29.5 bits (63), Expect = 0.49
Identities = 23/116 (19%), Positives = 45/116 (38%)
Frame = +1
Query: 169 YVKPNTGREHNKNYNPILNTDFLLHESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQL 348
Y + TGR+ +++ P TD + IP+ P+ D + + N + + +
Sbjct: 27 YSEKGTGRKDAEDHTPSKITDLEKNVDHSIPSFPENDPKNYSEFVNLNPPKRPDLEHTRG 86
Query: 349 GSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSST 516
S H + + N L +N +P+F T +P R+ ++ T
Sbjct: 87 SSWHTA---SENVNDLAANDSTRVQTPEFITQTMEDENVEVPPLERDERDAAAAHT 139
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 29.5 bits (63), Expect = 0.49
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Frame = +1
Query: 256 IPNTPKRDNLPTNTNI-ETNGKNNYN---SQFPQLGSTHKSQHTNTNQQSLQSNGKRDYV 423
+P D++P+ +++ E +N+ L S +K++ + + N
Sbjct: 524 VPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKTEGYTPSVVREEKNYSEPNA 583
Query: 424 SPQFTTPK---PSSGQTLIPQSTRNPNHNPSS 510
SP P+ P G+TL P+ TR P PSS
Sbjct: 584 SPSVIPPRVPTPVPGRTLSPKPTRIPTPIPSS 615
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 29.1 bits (62), Expect = 0.65
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 6/137 (4%)
Frame = +1
Query: 274 RDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPS 453
R PTN +I+ + Q +S TN N +L+S + PQ +
Sbjct: 1403 RTRTPTNEDIQRSDSKLREDQSRDRTPQSRS-FTNENNDNLRSVSRHTRREPQQAQNLNA 1461
Query: 454 SGQTLIPQSTR-----NPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVK-DLIHFYDGKS 615
+ +S R N N NP S T +S + NH+T+ K D + +
Sbjct: 1462 RREHESQKSDRWRQNGNVNRNPRVSNNNSTNVSRERSSEANHRTSNDNKRDEV----TEG 1517
Query: 616 KDQNAPQPIPSYSSILQ 666
KD+N Q I S+ Q
Sbjct: 1518 KDKNKRQDISGESNSRQ 1534
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.1 bits (62), Expect = 0.65
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Frame = +1
Query: 334 QFPQLGSTHK--SQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPS 507
+ QLGS + ++ T + +++G R P P P S P S +H PS
Sbjct: 934 EITQLGSNMRLPTKLTRPSNDGRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPS 993
Query: 508 ---SSTRGITPLSPTTKVQPNHQTTGK 579
S +P +P +V P + + K
Sbjct: 994 APLSKPVSTSPAAPLARVPPVPKLSSK 1020
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.65
Identities = 23/82 (28%), Positives = 34/82 (41%)
Frame = +1
Query: 301 IETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQS 480
+ET ++N+ + L S +Q Q + K VSP+ ++PK S
Sbjct: 202 LETE-ESNWKVRLQVLESKLATQDRKLRMQKKSTERKSLLVSPRVSSPKLFSPSKQAIMG 260
Query: 481 TRNPNHNPSSSTRGITPLSPTT 546
TR PN S S +TP T
Sbjct: 261 TRQPNAT-SGSPLSVTPFLQKT 281
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.7 bits (61), Expect = 0.86
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 298 NIETNGKNNYNSQFPQLG--STHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLI 471
N+ N +N + Q+ Q +TH S ++ + + S + P T PSS + +
Sbjct: 134 NVAANSIDNLSRQYSQPNHINTHDSVNSPPSYGIMASATNQPLSHP---TIVPSSNSSSL 190
Query: 472 PQSTRNPNHNPSSS 513
ST N +HNP S
Sbjct: 191 LNSTNNISHNPQVS 204
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 28.7 bits (61), Expect = 0.86
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 1/100 (1%)
Frame = +1
Query: 262 NTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTT 441
NT +P N + G+ SQ + T + +S+G +S Q +
Sbjct: 213 NTTSNLRVPVNASWSDAGRKE-KSQENKPKPTPFGSGGPSKPTPFESHGPAKQISVQPSE 271
Query: 442 -PKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQP 558
PKPS T S R+ + + +T L+P TK++P
Sbjct: 272 HPKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEP 311
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 28.7 bits (61), Expect = 0.86
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 328 NSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSG 459
NS PQ + + + + +T+Q + S+ K P +TP PSSG
Sbjct: 46 NSAIPQSNALNTTPNESTSQ--IDSSPKIPSAVPHISTPNPSSG 87
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +1
Query: 412 RDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQ-TTGKVKD 588
R +P F P P S + L P + R P + + P S P HQ VK+
Sbjct: 32 RTVSTPAFMEPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSSQPPAPPTHQREASPVKN 91
Query: 589 LIH 597
+ H
Sbjct: 92 IEH 94
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 436 TTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTG 576
T P PS P S+ + NPS++ +PL+ T K + T G
Sbjct: 376 TFPNPSVASPAFPNSSTS---NPSTAPASASPLASTLKPSTANDTNG 419
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +1
Query: 268 PKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPK 447
PK ++PT T+ N N S + +T +S T+ + + S + + +
Sbjct: 227 PKPQSVPTTTS-PNNENNALRSTANVINNTRQSTATSPSMFAGNSGNQIGLARVSSSFGR 285
Query: 448 PSSGQTLIPQ 477
P+SG ++PQ
Sbjct: 286 PTSGAKVVPQ 295
Score = 25.8 bits (54), Expect = 6.1
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 6/124 (4%)
Frame = +1
Query: 331 SQFPQLGSTHKSQH---TNTNQQSLQSNGKRDYVSPQFTTPKPSS---GQTLIPQSTRNP 492
S+ P + H + H T S+ ++ +Y + + S T +P + NP
Sbjct: 121 SEGPSTANAHANAHHQPAQTTTTSIPTSATDNYTTVNGNVNQSYSKGIDGTALPSTHANP 180
Query: 493 NHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHFYDGKSKDQNAPQPIPSYSSILQGT 672
PS++T T L T+ V +HQ + + +N P P P S+ T
Sbjct: 181 VAAPSTATTQHTQLPKTSAV--SHQKPHEAPSTAVKAPTATVAENEPYPKP--QSVPTTT 236
Query: 673 GNNN 684
NN
Sbjct: 237 SPNN 240
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +1
Query: 244 ESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTN 384
ESG I T D P N N E + N +S+ H+ +H N
Sbjct: 38 ESGNIQKTLLEDPCPENVNDENEDEQNRSSRSSSPLVKHEQRHRMYN 84
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 79 FERVSELSRSAVHL*TMKMRFLTMLCVLFFYVKPNTGREHNKNYNPILN 225
FE V L + + L M F T L +L+ KP EH K + LN
Sbjct: 1292 FEEVISLMEAGLGLERAHMAFYTELAILYAKYKPERMMEHLKLFWGRLN 1340
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 18/127 (14%)
Frame = +1
Query: 232 FLLHESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGK 411
F+L + NTP + P N + T+ + G++ +++ ++ Q++ S+ +
Sbjct: 231 FILAPNRSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGASIDAENASSRQETTPSDSR 290
Query: 412 RDYVSPQFTT------PKPSSGQTLIPQSTRN------------PNHNPSSSTRGITPLS 537
++ F +PSS + + T N P N S P+
Sbjct: 291 PSTLTSLFNAFFSSMPDRPSSNEPMTSNLTSNSGSMTNSTSTDLPTSNLPSQNAPARPVE 350
Query: 538 PTTKVQP 558
P+ +QP
Sbjct: 351 PSPSIQP 357
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/87 (21%), Positives = 41/87 (47%)
Frame = +1
Query: 256 IPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQF 435
I ++ + PT+T+ + ++ +S ST S ++++ S + S F
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSF 332
Query: 436 TTPKPSSGQTLIPQSTRNPNHNPSSST 516
++ P+S + I S+ +P+ + SST
Sbjct: 333 SS-SPTSSSSTISSSSSSPSSSSFSST 358
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 2.6
Identities = 36/134 (26%), Positives = 51/134 (38%)
Frame = +1
Query: 286 PTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQT 465
P T + N NN +S P G + +NT+ S S GK TT ++ T
Sbjct: 31 PAATGLFGNTNNNTSSTAPSGGLFGSNNASNTSAPSTFSFGK------AATTGNSTNAST 84
Query: 466 LIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHFYDGKSKDQNAPQPIP 645
P S + N N +T G PL + +TG + S A P
Sbjct: 85 SSPFSFGSTNTN---NTAGAKPLFGGLGSTGSANSTGDKSK-----NTASSATGAATTNP 136
Query: 646 SYSSILQGTGNNNF 687
S S+ G+ NN+F
Sbjct: 137 SGSTFNFGSSNNSF 150
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Frame = +1
Query: 307 TNGKNNYNSQFPQLGSTHKSQHTNTNQQSL-QSNGKRDYVSPQFTTPKPSSGQTLIPQST 483
TN + +S FPQ+ S NT+ Q++ S+ R P + + S L+ S+
Sbjct: 74 TNNERLNSSSFPQIHDNQLSPSFNTSYQAIPSSSSNRSRGGPYTPSIRDDSLLALLSFSS 133
Query: 484 RNPNHNPSSSTRGITPLSP-TTKVQP 558
+ H+ S + S TT + P
Sbjct: 134 NHRLHSMPSQLQPFNNASSYTTPMAP 159
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/104 (22%), Positives = 42/104 (40%)
Frame = +1
Query: 262 NTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTT 441
+TP + NT+I + NS P ST + T+ S+ ++ S T
Sbjct: 1269 STPITSSTALNTSIPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNT 1328
Query: 442 PKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
P + +++ ST + S+ TP++ +T V + T
Sbjct: 1329 STPITSSSVLNSSTPITS---STVVNSSTPITSSTVVNTSTPIT 1369
Score = 26.2 bits (55), Expect = 4.6
Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 1/120 (0%)
Frame = +1
Query: 217 ILNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQS 393
ILN+ + S + +TP + NT+ + NS P ST + T S
Sbjct: 761 ILNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVLNSSTPITSSS 820
Query: 394 LQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
+ ++ S T P + T++ ST + SS TP++ +T + + T
Sbjct: 821 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPITS---SSVLNSSTPITSSTALNTSTPIT 877
Score = 26.2 bits (55), Expect = 4.6
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T+ S+
Sbjct: 2370 LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTSITSSSV 2429
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S + P + T++ ST + SS TP++ +T + + T
Sbjct: 2430 LNSSTPITSSSVLNSSTPITSSTVVNSSTPITS---SSVLNSSTPITSSTALNTSTPIT 2485
Score = 25.8 bits (54), Expect = 6.1
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T S+
Sbjct: 1758 LNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSV 1817
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S T P + T++ ST + +++ IT S P +T
Sbjct: 1818 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 1876
Score = 25.8 bits (54), Expect = 6.1
Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ NS P ST + T S+
Sbjct: 2478 LNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSV 2537
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S T P + T++ ST + +S+ IT S P +T
Sbjct: 2538 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSLTALNSSTPITSSSVLNSSTPITSST 2596
Score = 25.8 bits (54), Expect = 6.1
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T S+
Sbjct: 2622 LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2681
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S T P + T++ ST + +++ IT S P +T
Sbjct: 2682 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 2740
Score = 25.8 bits (54), Expect = 6.1
Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T S+
Sbjct: 2850 LNTSTPITSSSVLNSSTPITSSTALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 2909
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S T P + T++ ST + +++ IT S P +T
Sbjct: 2910 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 2968
Score = 25.4 bits (53), Expect = 8.0
Identities = 26/119 (21%), Positives = 43/119 (36%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T ++
Sbjct: 1302 LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNSSTPITSSTV 1361
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
+ S T P + T++ ST + +S+ IT S P +T
Sbjct: 1362 VNTSTPITSSTVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSSTPITSST 1420
Score = 25.4 bits (53), Expect = 8.0
Identities = 24/104 (23%), Positives = 39/104 (37%)
Frame = +1
Query: 262 NTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTT 441
+TP + NT+ + NS P ST + T S+ ++ S T
Sbjct: 2301 STPITSSTALNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNT 2360
Query: 442 PKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
P + T + ST + SS TP++ +T V + T
Sbjct: 2361 STPITSSTALNTST---SITSSSVLNSSTPITSSTVVNTSTPIT 2401
Score = 25.4 bits (53), Expect = 8.0
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Frame = +1
Query: 220 LNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSL 396
LNT + S + +TP + NT+ + NS P ST + T ++
Sbjct: 2970 LNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTV 3029
Query: 397 QSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
++ S T P + T++ ST + SS TP++ +T + + T
Sbjct: 3030 VNSSTPITSSTALNTSTPITSSTVLNSSTPITS---SSVLNSSTPITSSTALNTSTPIT 3085
Score = 25.4 bits (53), Expect = 8.0
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 1/120 (0%)
Frame = +1
Query: 217 ILNTDFLLHESGGI-PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQS 393
++NT + S + +TP + NT+ NS P ST + T S
Sbjct: 3257 VVNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSS 3316
Query: 394 LQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTT 573
+ ++ S T P + +++ ST + + +S+ +T S P +T
Sbjct: 3317 VLNSSTAITSSTALNTSTPITSSSVLNSSTAITSSSILNSSTPVTSSSVLNSSTPITSST 3376
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.5
Identities = 16/65 (24%), Positives = 27/65 (41%)
Frame = +1
Query: 271 KRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKP 450
+R N P N + ++ G + +N+ FP + + N L NG + S +
Sbjct: 247 RRSNSPLNPSHDSAGASTFNTYFPNSTYQNILNSLDNNPAVLDLNGPPNQESSSSASSYG 306
Query: 451 SSGQT 465
S QT
Sbjct: 307 SRTQT 311
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.5
Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 3/111 (2%)
Frame = +1
Query: 241 HESGGIPNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDY 420
H S P+ NL + ++E N S FP L H QH+ + ++
Sbjct: 25 HTSNEYSGKPEFINL--SPDLEENLDEKLMSAFPGL-EPHVFQHSQSPLSHKDASLLATM 81
Query: 421 VSPQFTTPK---PSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNH 564
S + P S QT P + + N PSS GI+P + + NH
Sbjct: 82 PSVASSNPSLISSGSSQTGSPSQSLSSNKEPSS--PGISPSNDSQSQNTNH 130
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 394 LQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTK 549
+ S K D S Q T P + P H+PS S TPL P TK
Sbjct: 229 VDSYTKEDLASLQHTRPLSTK-----PNVVNGATHSPSPSLPFKTPLLPVTK 275
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.8 bits (54), Expect = 6.1
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = +1
Query: 436 TTPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQP-----NHQTTGKVKDLIHF 600
TT P + +PQ NP++ +S + + SP + V P NH + D F
Sbjct: 352 TTGSPKVALSQMPQVNVNPSNQDLASVKQPSGFSPPSAVAPPPGLGNHNFSN--DDSSFF 409
Query: 601 YDGKSKDQNAPQPIPSYSS 657
+ D + P P +S+
Sbjct: 410 RSLMTSDTRSVPPPPGFST 428
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 6.1
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 2/135 (1%)
Frame = +1
Query: 289 TNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTL 468
TN + E + + +S P +T +Q +NGK PQ T + SS Q
Sbjct: 194 TNYSREKDASRSIDSSNPSAEYRDDINNTFGSQTVSSANGKE---VPQ--TSEDSSSQA- 247
Query: 469 IPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKVKDLIHFYDGKSKD--QNAPQPI 642
P + + H PS + Q H + +G ++ N P
Sbjct: 248 -PHHSSSSGHAPSQQGGNKHSYKKSDSQQSFHHKGRNTRKGQRHNNGFYRNIANNIQGPF 306
Query: 643 PSYSSILQGTGNNNF 687
P+Y ++ G G N +
Sbjct: 307 PNYPVVVNGNGVNPY 321
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 6.1
Identities = 22/74 (29%), Positives = 30/74 (40%)
Frame = +1
Query: 352 STHKSQHTNTNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPSSSTRGITP 531
ST Q T + S S V PQ +TP SS PQST + + S T
Sbjct: 453 STSVKQPTASVASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVSEVSS-TL 511
Query: 532 LSPTTKVQPNHQTT 573
LS ++ + +T
Sbjct: 512 LSGSSAIPSTSSST 525
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/45 (28%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 190 REHNKNYNPILNTDFLLHESGGIPNT-PKRDNLPTNTNIETNGKN 321
+EH+KN I+N ++ +S G+ N+ P N +++ +T+ N
Sbjct: 86 QEHHKNSPKIINDVLVIGKSDGLINSFPLSQNYISSSESQTSSGN 130
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.0
Identities = 25/129 (19%), Positives = 47/129 (36%), Gaps = 9/129 (6%)
Frame = +1
Query: 187 GREHNKNYNPILNTDFLLHESGGIPNTPKRDNLPTNTNIETNG-----KNNYNSQFPQLG 351
G+ H N+ PI+N LLH + P + T + N K+N+ + +L
Sbjct: 20 GKVHLSNFLPIINDLQLLHPASAPPLLSEFQKQCTLEFVRQNADLSITKDNFRDVYKKLT 79
Query: 352 STHKSQHTN-TNQQSLQSNGKRDYVSPQFTTPKPSSGQTLIPQSTRNPNHNPS---SSTR 519
N + S++ ++ + +S + + + NPS S
Sbjct: 80 ENEDDSFANQAEKPSMEQQNSKNSIKEDANEHSVNSAHSKSSSNASPESLNPSQMMSKRL 139
Query: 520 GITPLSPTT 546
+ P+S T
Sbjct: 140 SLPPMSQFT 148
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 439 TPKPSSGQTLIPQSTRNP-NHNPSSSTRGITPLSP 540
+P+P +G +LIP ST N+ +SS G T P
Sbjct: 588 SPQPYAGASLIPPSTGAAFNNETASSNAGETTALP 622
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.0
Identities = 25/108 (23%), Positives = 50/108 (46%)
Frame = +1
Query: 259 PNTPKRDNLPTNTNIETNGKNNYNSQFPQLGSTHKSQHTNTNQQSLQSNGKRDYVSPQFT 438
P+TP + + ++ N + + NS Q ++ + +++N SLQS + +S
Sbjct: 43 PSTPNGKEAASPSALKQNVRPSLNS-VQQTPASIDAVASSSNV-SLQS---QQPLSKPVV 97
Query: 439 TPKPSSGQTLIPQSTRNPNHNPSSSTRGITPLSPTTKVQPNHQTTGKV 582
+ KP+ T +P + NP+ + SS++ +SP +G V
Sbjct: 98 SSKPNQ-TTAMPPPSNNPSRHVSSTSNKPAAVSPNPAAHHAELPSGSV 144
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 365 ANIQIQTSNLYSRTVKEIMYLHN 433
AN+Q++ N+ + +KE MYL N
Sbjct: 916 ANLQVEHENMSALLLKEKMYLKN 938
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,216
Number of Sequences: 5004
Number of extensions: 74177
Number of successful extensions: 357
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -