Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23p04
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.94 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 222 AHSGRRATSTPTPARGPALRASAGSASTPRHPG 124
           A +   A +TPTP   P   A AG+A     PG
Sbjct: 42  AGTSTTAAATPTPPSVPVGSAVAGTAGGALFPG 74


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 258  YARNVVMFLGDGMSVATLTAARTLLGQRR 344
            Y RN+  +  DG+     T   TL GQ R
Sbjct: 1221 YKRNINTYTLDGVGSVEKTGVSTLRGQER 1249


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 315 AARTLLGQRRGQTGEESRLSFEHFPTV 395
           A R +L +RR Q+  E+   F+  PTV
Sbjct: 229 ARRIVLEERRAQSHLEAHCYFDIEPTV 255


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 603 IVTTTRVTHASPAGAYAHTADRNWES 680
           +  +  + H S    Y+HT D N  S
Sbjct: 218 LTNSNSIKHESDNSDYSHTTDENRHS 243


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -1

Query: 361 SSPVCPRRWPSSVRAAVSVATDMPSPRNMTTFRAYPLLPSYQARSPS 221
           S+ V   R P+  +   S    MP   NM+     P LP+     P+
Sbjct: 395 SALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPT 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,915
Number of Sequences: 438
Number of extensions: 3275
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)