Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23o24
(627 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 190 1e-49
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 72 8e-14
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 72 8e-14
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 71 1e-13
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 68 1e-12
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 67 2e-12
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 64 2e-11
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 52 5e-08
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 48 8e-07
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 47 2e-06
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 47 2e-06
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 6e-05
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 41 2e-04
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 36 0.006
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 33 0.026
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 29 0.55
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 28 0.96
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 2.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 2.9
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 2.9
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 26 5.1
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 6.8
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 6.8
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 9.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.0
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 190 bits (464), Expect = 1e-49
Identities = 88/138 (63%), Positives = 102/138 (73%)
Frame = +2
Query: 209 QSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAIT 388
+ C + + SGL + R YA++++F R KPH N+GTIGHVDHGKTTLTAAIT
Sbjct: 15 RKNCLRLNRISFASGLINRFTVPARTYADEKVFVRKKPHVNIGTIGHVDHGKTTLTAAIT 74
Query: 389 KVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMI 568
K LSDL A Y+ ID APEEKARGITI+ AHVEY+T RHY H DCPGHADYIKNMI
Sbjct: 75 KCLSDLGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMI 134
Query: 569 TGTAQMDGAILVVAATDG 622
TG A MDGAI+VV+ATDG
Sbjct: 135 TGAATMDGAIIVVSATDG 152
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 71.7 bits (168), Expect = 8e-14
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +2
Query: 311 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 445
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 446 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 71.7 bits (168), Expect = 8e-14
Identities = 44/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +2
Query: 311 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 445
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 446 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D AIL++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTG 121
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 71.3 bits (167), Expect = 1e-13
Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 15/119 (12%)
Frame = +2
Query: 311 RTKPHCNVGTIGHVDHGKTTLTAAIT---------------KVLSDLNLAQKKGYADIDN 445
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 446 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
E+ RGITI++A +++T + + D PGH D+IKNMITGT+Q D A+L++ G
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTG 121
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 67.7 bits (158), Expect = 1e-12
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Frame = +2
Query: 317 KPHCNVGTIGHVDHGKTTLTAAIT------------KVLSDLNLAQKKGYA---DIDNAP 451
K H N+ IGHVD GK+TL I K+ + A K+ + +D+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 452 EEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
EE+ +G T+ V ++TE R + D PGH Y+ NMI G +Q D +LV++A G
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 352
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 67.3 bits (157), Expect = 2e-12
Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Frame = +2
Query: 299 QIFERT--KPHCNVGTIGHVDHGKTTLTAAITKVLSDLN--LAQK---------KG---Y 430
+IFE++ KP ++ GHVD GK+T+ I L ++N QK KG Y
Sbjct: 167 EIFEQSNPKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSY 226
Query: 431 A-DIDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVV 607
A +D EE+ARG+T++VA ++++++ Y D PGH D+I MI G + D A+LVV
Sbjct: 227 AWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVV 286
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 63.7 bits (148), Expect = 2e-11
Identities = 38/104 (36%), Positives = 52/104 (50%), Gaps = 5/104 (4%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYAD-----IDNAPEEKARGITINVAHV 493
NVG I H+D GKTTLT K+L G D +D P E+ RGITIN A +
Sbjct: 30 NVGIIAHIDAGKTTLTE---KMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 494 EYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
+ + D PGHAD+ + A +DGA+ ++ + GV
Sbjct: 87 SFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDGSAGV 130
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 52.4 bits (120), Expect = 5e-08
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV---AHVEY 499
N I H+DHGK+TL+ I K+ +N + +D E+ RGIT+ + + Y
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQF-LDKLEVERRRGITVKAQTCSMIYY 118
Query: 500 QTEQRH-YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
Q + D PGH D+ ++ A +G IL+V A+ G+
Sbjct: 119 YHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQGI 161
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 48.4 bits (110), Expect = 8e-07
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 22/119 (18%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD--IDNAPEEKA------ 463
N+GTIGHV HGK+T+ AI+ V + + N+ K GYA+ I E+
Sbjct: 25 NIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCSNEECPRPGCY 84
Query: 464 RGITINVA-HVEYQTEQ------RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATD 619
R + N H + RH DCPGH + M+ G A MD A+L++A +
Sbjct: 85 RSYSSNKEDHPPCEICNSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNE 143
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 508
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 509 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
D PGH D+ + DGA++VV +GV
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 47.2 bits (107), Expect = 2e-06
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 16/115 (13%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 508
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI + E
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAE 80
Query: 509 QRH----------------YGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
D PGH D+ + DGA++VV +GV
Sbjct: 81 MTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 42.3 bits (95), Expect = 6e-05
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 24/183 (13%)
Frame = +2
Query: 149 MASITFVKSLVSPAVKL-VLKQSQCANVRNTTVLSGLTPLSIILKRHYAEKQIFERTKPH 325
M ++F +SL S +L L A+V NT + + T + + + +R K
Sbjct: 1 MLKLSF-RSLTSRLPRLSTLVVRGYASVANTGIEASNTSENNLNIQEQLNDNDKKRLKQI 59
Query: 326 CNVGTIGHVDHGKTTLTAAI---TKVLSDLNLAQKKGY--ADIDNAPEEKARGITI---- 478
N+G H+D GKTT T + T + D++ + K A +D E+ +GITI
Sbjct: 60 RNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAA 119
Query: 479 -------NVAHVEYQTEQR-------HYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 616
V +E +Q+ + D PGH D+ + +DGA+LV+ A
Sbjct: 120 THCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAV 179
Query: 617 DGV 625
GV
Sbjct: 180 SGV 182
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 40.7 bits (91), Expect = 2e-04
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 12/111 (10%)
Frame = +2
Query: 329 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEY--- 499
N + HVDHGKTTL ++ ++ +D +E RGIT+ + +
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITMKSSAISLFFK 80
Query: 500 ---QTEQRHYGHT------DCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
Q +++ D PGH D+ + + + DGA ++V A +GV
Sbjct: 81 VISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGV 131
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 35.5 bits (78), Expect = 0.006
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +2
Query: 344 GHVDHGKTTLTAAITKVLS-DLNLAQKKG--YADIDNAPEEKARGIT---INVAHVEYQT 505
GH+ HGK+ L + D +++ Y D E+ I + +A + +
Sbjct: 147 GHLHHGKSALLDLLVYYTHPDTKPPKRRSLRYTDTHYLERERVMSIKSTPLTLAVSDMKG 206
Query: 506 EQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
+ + D PGH D++ + A DG +LVV +GV
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGV 246
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.5 bits (73), Expect = 0.026
Identities = 31/98 (31%), Positives = 39/98 (39%)
Frame = +2
Query: 332 VGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQ 511
V +GHVDHGKTTL A K S + + G +K T V +
Sbjct: 174 VTLMGHVDHGKTTLLDAFRK--STIASTEHGGIT-------QKIGAFT-----VPFDKGS 219
Query: 512 RHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
+ D PGH + G D +LVVA DGV
Sbjct: 220 KFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDGV 257
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 29.1 bits (62), Expect = 0.55
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 15 YNTSSCCKFEKINECTYCKISKQKLIGISENLIFNTA 125
Y+T+S K ++ +YC +S I +E+++ N A
Sbjct: 56 YHTTSVLKHHNVSNTSYCNLSPSLFIKFAEDVLSNLA 92
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 28.3 bits (60), Expect = 0.96
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = -1
Query: 150 MLNELFNTKRC*ILNFQKFRLIFVWIFYNKYIHLFFRICSTSLYY 16
+L+ + +K C L+ K L+F+ ++ +Y++LF+R SLYY
Sbjct: 19 LLHRMKKSKTCSGLSL-KSHLLFLLVYVTRYLNLFWRY--KSLYY 60
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 356 DQHVRLCQHCNGALYVQRFVFLHN 285
D H+R+ G Y++RFV HN
Sbjct: 475 DYHIRITFLAKGTEYIERFVKAHN 498
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 2.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 317 KPHCNVGTIGHVDHGKTTLTAAITKVL 397
KP +G +G GK+TLT A+ +++
Sbjct: 1249 KPQEKIGIVGRTGAGKSTLTLALFRLI 1275
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 530 DCPGHADYIKNMITGTAQ 583
D HADY K MITG A+
Sbjct: 715 DMHSHADYFKEMITGYAK 732
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 305 FERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADI 439
F+ K C +GHVD + L A ++ ++ L KKG+ +I
Sbjct: 156 FQLKKVLCLGVAVGHVDMAEEQLAANLSLAINFLVSLLKKGWQNI 200
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 449 PEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMIT 571
PE K R IN A +YQ E G T ++ + N+IT
Sbjct: 311 PEIKVR---INAALAKYQAELHSLGDTPVGDNSSIVLNLIT 348
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 371 LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYG 523
+ A IT S + L I N+ +K + N++H + T RH+G
Sbjct: 529 ILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFG 579
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.0 bits (52), Expect = 9.0
Identities = 6/17 (35%), Positives = 14/17 (82%)
Frame = -1
Query: 90 LIFVWIFYNKYIHLFFR 40
++F+WI Y+ ++ +FF+
Sbjct: 263 MLFIWIVYSIFLSIFFK 279
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.0 bits (52), Expect = 9.0
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 485 AHVEYQTEQRHYGHTDCPGHAD 550
AH YQT+ HY T H D
Sbjct: 266 AHPIYQTQHSHYDETPTSHHPD 287
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,516,461
Number of Sequences: 5004
Number of extensions: 51063
Number of successful extensions: 153
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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