Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23o24
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    76   3e-16
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    75   8e-16
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    66   3e-13
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    52   5e-09
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    41   1e-05
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    37   2e-04
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.8  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    23   2.4  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   7.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   9.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 75.8 bits (178), Expect = 3e-16
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
 Frame = +2

Query: 311 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 445
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G     YA + D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 446 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 63  LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 121


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 74.5 bits (175), Expect = 8e-16
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 15/119 (12%)
 Frame = +2

Query: 311 RTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNL---------AQKKG-----YADI-DN 445
           + K H N+  IGHVD GK+T T  +      ++          AQ+ G     YA + D 
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 62

Query: 446 APEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
              E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 63  LKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGIG 121


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 66.1 bits (154), Expect = 3e-13
 Identities = 30/62 (48%), Positives = 43/62 (69%)
 Frame = +2

Query: 437 IDNAPEEKARGITINVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAAT 616
           +D    E+ RGITI++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA 
Sbjct: 3   LDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 62

Query: 617 DG 622
            G
Sbjct: 63  TG 64


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 52.0 bits (119), Expect = 5e-09
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = +2

Query: 479 NVAHVEYQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDG 622
           ++A  +++T + +    D PGH D+IKNMITGT+Q D A+L+VAA  G
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 48


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 40.7 bits (91), Expect = 1e-05
 Identities = 37/103 (35%), Positives = 47/103 (45%)
 Frame = +2

Query: 317 KPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVE 496
           K H  V  +GHVDHGKTTL  A    L + ++A K  +  I            I    V 
Sbjct: 143 KRHPIVTIMGHVDHGKTTLLDA----LRNTSIA-KSEFGGITQC---------IGAFDVT 188

Query: 497 YQTEQRHYGHTDCPGHADYIKNMITGTAQMDGAILVVAATDGV 625
            ++ +R     D PGHA +I     G    D  +LVVAA DGV
Sbjct: 189 LESGER-VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGV 230


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 36.7 bits (81), Expect = 2e-04
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +2

Query: 329 NVGTIGHVDHGKTTLTAAITKV--LSDLNLAQKKGYADIDNAPEEKARG 469
           N+GTIGHV HGK+T+  AI+ V  +   N  ++     +D   E+  RG
Sbjct: 44  NIGTIGHVAHGKSTIVKAISGVQTVRFKNELERNITIKLDTRAEDSTRG 92


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +3

Query: 51  NECTYCKISKQKLIGISENLI 113
           N C YC++ K   +G+S + +
Sbjct: 118 NRCQYCRLKKCIAVGMSRDAV 138


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 559 EHDYRHSTNGWCYISSSC 612
           E DY    N W YI S C
Sbjct: 298 ESDYYPDLNEWLYILSGC 315


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 51  NECTYCKISKQKLIGISEN 107
           N C YC++ K   +G+S +
Sbjct: 69  NRCQYCRLKKCIAVGMSRD 87


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 224 NVRNTTVLSGLTPLSIILK 280
           + R TT+ + +TPLS+ LK
Sbjct: 328 SARPTTIETRVTPLSLSLK 346


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 105 FQKFRLIFVWIFYNKYIHLFFRICSTSLYYS 13
           F  F  IF  I     +H F +  S   Y+S
Sbjct: 281 FLSFAFIFATIIQFAVVHYFTKYGSGECYFS 311


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 515 HYGHTDCPGHAD 550
           HYGH   PG  D
Sbjct: 280 HYGHHPDPGEVD 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,175
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 15
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)