Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23o18
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    24   1.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    24   1.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   6.1  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   6.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 192 LSQQKSLLLGFCSVQLIAFLIKAKTVALTLITIVK 88
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 192 LSQQKSLLLGFCSVQLIAFLIKAKTVALTLITIVK 88
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 192 LSQQKSLLLGFCSVQLIAFLIKAKTVALTLITIVK 88
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 192 LSQQKSLLLGFCSVQLIAFLIKAKTVALTLITIVK 88
           LS   SL L   +  LI  ++   T+ALTL+T+V+
Sbjct: 16  LSSVLSLSLTSLASSLIFTILCILTLALTLVTLVR 50


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = +3

Query: 300 PLRPPRMKFVTEIWHPNIDKNGDVCISI 383
           PL    +  VT IWH N+    D  I I
Sbjct: 394 PLSSTGLAQVTGIWHSNLTTPDDPDIQI 421


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 130 KSEDCGSDINYNCEIY 83
           ++EDCGS I Y  +++
Sbjct: 316 RNEDCGSAIAYVSDVF 331


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 517 LAGLSSFGSASIEMTLISIVSTVC 446
           LAG + FGS +I + ++ ++  +C
Sbjct: 192 LAG-TVFGSVAIAIAIVELIGIIC 214


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 83   P*RHETNDFSTKDGWQSFEQVVKHMSY 3
            P   ET DFS +DG +   Q++   +Y
Sbjct: 1024 PYMFETVDFSKEDGKEHHLQIMNLKTY 1050


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 159 CSVQLIAFLIKAKTVALTLITIVKFTLKTR 70
           C++Q ++FL      AL ++    + +KTR
Sbjct: 667 CNIQDMSFLFSQLYNALLILISTVYAVKTR 696


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -1

Query: 159 CSVQLIAFLIKAKTVALTLITIVKFTLKTR 70
           C++Q ++FL      AL ++    + +KTR
Sbjct: 757 CNIQDMSFLFSQLYNALLILISTVYAVKTR 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,569
Number of Sequences: 438
Number of extensions: 4033
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)