Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23o16
         (544 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    28   0.77 
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   2.4  
SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    26   4.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   4.1  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   5.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   5.5  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.5  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          25   9.5  

>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 28.3 bits (60), Expect = 0.77
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 203 CADSTVHHSSSTANGP 250
           CADS++H  SST NGP
Sbjct: 368 CADSSIHLYSSTNNGP 383


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +3

Query: 117 SGVNIAETTQNPPPYNNQIQTDLYHVGPTVPTQQFITVQAPQMGPKS 257
           SG++  E TQ  PP ++   + +    P  P+++     +P+   KS
Sbjct: 148 SGIDDIELTQRTPPSSSHTSSSILQNTPVTPSRKIFHYLSPRDRNKS 194


>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = -3

Query: 416 CGVSAAFAAIRNASTGPAT*TAKE*STQVGFRRRYIFYSGLDGRSATWAG 267
           CGV + F+++R   +G  +  A      + F    +F+  LDG+ A W G
Sbjct: 56  CGVMSIFSSLRYCLSGQQS--AFHLWNAMYFMPFALFFDFLDGKVARWRG 103


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 211 VGTVGPT*YKSVCIWLLYGGGF*VVSAMFTPDKSA*CCTRDVFILFYHT 65
           V T G     SVC++L Y GGF V     T        T  +FIL++ T
Sbjct: 327 VKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFAT 375


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +1

Query: 367 GPVLAFLIAAKAAETPHTTVRTAARISGATSVNHLNFC 480
           GP + +    ++   P+T+  +  R+S  TS+   +FC
Sbjct: 340 GPPMLYKFPQRSYTAPNTSFNSQRRMSSITSLPTASFC 377


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 154 GGF*VVSAMFTPDKSA*CCTRDVFILFYHTVLPN 53
           GG  +VSA+FT    +  CTR + + F    L N
Sbjct: 284 GGIQIVSALFTDIPRSVYCTRGMLLGFLQRSLKN 317


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 159 YNNQIQTDLYHVGPTVPTQQFITVQAPQM 245
           YN  I  + +HV P++P  +FI +    M
Sbjct: 838 YNEPIHQNAFHVVPSMPFVKFIRLDENSM 866


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 2   NSHTVNRLRRTWLHIDS 52
           NS  ++RLR+TW +++S
Sbjct: 761 NSSPIHRLRKTWANLNS 777


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/56 (21%), Positives = 22/56 (39%)
 Frame = +3

Query: 147 NPPPYNNQIQTDLYHVGPTVPTQQFITVQAPQMGPKSVRYTCPSCRASIKTRVEYV 314
           NP   + +   D Y + P+ P  QF       +  +S+ + C   +  I+     V
Sbjct: 488 NPDDTSIKTIVDFYGIDPSFPRDQFFVRNQSGIPVRSIYFACSLFKEIIEANTNRV 543


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,207,438
Number of Sequences: 5004
Number of extensions: 43267
Number of successful extensions: 116
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)