Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23o16
         (544 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.66 
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   1.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   2.0  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 328 PTCVLYSFAVYVAGPVLAFLIAAKAAETPHTTVRTAAR 441
           P+C    + +  A P+LA  +AA +++   T++  A R
Sbjct: 99  PSCRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATR 136


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 189 HVGPTVPTQQFITVQAPQMGP 251
           H+GP+ P  QFI   A +  P
Sbjct: 152 HIGPSTPFPQFIPPNAYKFRP 172


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 95  QRRFHFILPHSFTEHYLYV 39
           +RR  FIL H F   Y YV
Sbjct: 358 KRRISFILVHGFPLEYEYV 376


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,531
Number of Sequences: 438
Number of extensions: 3725
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)