Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23o06
(681 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 243 1e-64
AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 243 1e-64
AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h at... 117 7e-27
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 27 9.4
U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t prot... 27 9.4
U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t prot... 27 9.4
U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t prot... 27 9.4
>AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoforma protein.
Length = 384
Score = 243 bits (594), Expect = 1e-64
Identities = 113/194 (58%), Positives = 145/194 (74%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 268
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 269 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 448
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 449 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 628
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 629 TLLVIVPKSMFNDW 670
T++V+VPK +W
Sbjct: 186 TVIVVVPKISVKEW 199
>AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein
protein.
Length = 384
Score = 243 bits (594), Expect = 1e-64
Identities = 113/194 (58%), Positives = 145/194 (74%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 268
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 269 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPTYLTRFQWDMAKYPIKQSLRNIAD 448
E V RK+ QY EVLE+ + K+ ENL+ N D+ TY+T+FQW+ AKYP+KQSL+ +++
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGNKDMKTYVTKFQWEGAKYPLKQSLKVLSE 125
Query: 449 IISKQVGQIDADLKVKSSAYNALKGNLHNLEKKQTGSLLTRNLADLVKKEHFILDSEYLT 628
II KQ+ QID DLKVKS YN LK L ++++K GSLLT++LADLVK + F+L+SEYL
Sbjct: 126 IIGKQISQIDNDLKVKSLTYNNLKNALASMDRKTVGSLLTKDLADLVKADDFVLNSEYLQ 185
Query: 629 TLLVIVPKSMFNDW 670
T++V+VPK +W
Sbjct: 186 TVIVVVPKISVKEW 199
>AC024762-3|AAO91689.2| 133|Caenorhabditis elegans Vacuolar h
atpase protein 11, isoformb protein.
Length = 133
Score = 117 bits (282), Expect = 7e-27
Identities = 56/92 (60%), Positives = 65/92 (70%)
Frame = +2
Query: 89 EYWVISAPGDKTCQQTWDTLNNATKSGNLSVNYKFPIPDLKVGTLDQLVGLSDDLGKLDT 268
EYW+IS PG+K WD LN +T GN S N K+ IPDLKVGTLDQLVGLSDDL KLDT
Sbjct: 8 EYWLISVPGEKGANDAWDKLNRST--GNTSTNSKYLIPDLKVGTLDQLVGLSDDLSKLDT 65
Query: 269 FVEGVTRKVAQYLGEVLEDQRDKLHENLMANN 364
E V RK+ QY EVLE+ + K+ ENL+ N
Sbjct: 66 SAEAVIRKLVQYFTEVLEEDKSKIAENLVIGN 97
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 380 YLTRFQWDMAKYPIKQSLRNIADIISKQVGQIDADLKVKSSAYNALKG 523
YL + A++ Q L+ I D + KQV Q D K +A LKG
Sbjct: 251 YLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQQLKG 298
>Z81575-7|CAB04638.1| 367|Caenorhabditis elegans Hypothetical
protein R08H2.8 protein.
Length = 367
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 212 VGTLDQLVGLSDDLGKLDTFVEGVTR 289
VG D + GL GKL+ F+ GVT+
Sbjct: 161 VGQYDYITGLEGSSGKLNVFMGGVTK 186
>Z82282-5|CAB05270.1| 555|Caenorhabditis elegans Hypothetical
protein T07G12.5 protein.
Length = 555
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Frame = +2
Query: 260 LDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLPT----YLTRFQWDMAKYPIKQ 427
LD G TR+ ++ E+ ED + + N LP+ + R+ W + P+
Sbjct: 467 LDNITGGATRRQRGFVSEIDEDDDVEEQATVEMNGYALPSKLNQFFLRYSW-LTYLPVIP 525
Query: 428 SLRNIADIISK 460
S R I +I K
Sbjct: 526 SEREIREIEEK 536
>Z82278-6|CAB05258.1| 690|Caenorhabditis elegans Hypothetical
protein M162.7 protein.
Length = 690
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/67 (22%), Positives = 30/67 (44%)
Frame = +2
Query: 197 IPDLKVGTLDQLVGLSDDLGKLDTFVEGVTRKVAQYLGEVLEDQRDKLHENLMANNSDLP 376
+ D+ + + +L+GL D K DTF+ +T + ++ ++ + N S L
Sbjct: 101 LKDISMESSKELIGLGSDAFKYDTFIHNLTSVRDSFKFPGKDEYYAEVESVMKFNMSKLE 160
Query: 377 TYLTRFQ 397
+ FQ
Sbjct: 161 DVMNEFQ 167
>Z50756-3|CAI79214.1| 305|Caenorhabditis elegans Hypothetical
protein T08D10.4 protein.
Length = 305
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -3
Query: 133 LLTGLVARGTDHPVFSHFHHKNLKINAVYNK-LSETANNFGETTR 2
+LT + + + V HFH K+LKI + NK + E N+ T+
Sbjct: 93 VLTSISSDLASNNVTEHFHDKSLKIEQMKNKTIRENDNSHNNQTQ 137
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical
protein F54B3.1b protein.
Length = 3394
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 418 HKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDREL 561
H +ES+ HK G DR G ++ +QR T+ R E ++L
Sbjct: 187 HLSESSAASTSHKNDGDADRAMDGGNLMSIQRGIWSATE-RHEDQKQL 233
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical
protein F54B3.1a protein.
Length = 3396
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 418 HKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDREL 561
H +ES+ HK G DR G ++ +QR T+ R E ++L
Sbjct: 187 HLSESSAASTSHKNDGDADRAMDGGNLMSIQRGIWSATE-RHEDQKQL 233
>U29082-4|AAT92084.1| 279|Caenorhabditis elegans Troponin t protein
3, isoform c protein.
Length = 279
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 418 HKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDREL 561
H+ E + +++ RT+R E ++ +L+ Q K RE+ ++E+
Sbjct: 64 HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111
>U29082-3|AAT92083.1| 1178|Caenorhabditis elegans Troponin t protein
3, isoform b protein.
Length = 1178
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 418 HKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDREL 561
H+ E + +++ RT+R E ++ +L+ Q K RE+ ++E+
Sbjct: 898 HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 945
>U29082-2|AAT92082.1| 350|Caenorhabditis elegans Troponin t protein
3, isoform a protein.
Length = 350
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 418 HKAESAEYRRHHKQTGRTDRRGSEGQVLRLQRSQRKPTQFREETDREL 561
H+ E + +++ RT+R E ++ +L+ Q K RE+ ++E+
Sbjct: 64 HEEEQHAKLQDYEERRRTEREKEEEELKKLKEKQEKRKLEREQEEKEM 111
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,403
Number of Sequences: 27780
Number of extensions: 325229
Number of successful extensions: 1077
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -