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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23o01
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...   217   1e-57
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...   133   2e-32
SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2...   122   5e-29
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...   116   3e-27
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac...   116   3e-27
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...   113   3e-26
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...   112   4e-26
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...   107   2e-24
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    97   2e-21
SPBC1198.09 |ubc16||ubiquitin conjugating enzyme Ubc16|Schizosac...    93   3e-20
SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    84   2e-17
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac...    84   2e-17
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    67   2e-12
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    47   3e-06
SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr 1|||...    27   2.6  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.6  
SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyce...    26   4.6  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.6  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   6.1  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    25   8.1  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   8.1  

>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score =  217 bits (531), Expect = 1e-57
 Identities = 94/134 (70%), Positives = 115/134 (85%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK 272
           +Q+DPP GVS +P  +N+M+WNAVI GP DTPFEDGTFKL + F E+YPNKPP V+FVS 
Sbjct: 16  MQQDPPAGVSASPVSDNVMLWNAVIIGPADTPFEDGTFKLVLSFDEQYPNKPPLVKFVST 75

Query: 273 MFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRR 452
           MFHPNVYA+G +CLDILQNRWSPTYDV+AILTSIQSLL+DPN  SPAN+ AAQL++EN++
Sbjct: 76  MFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNNASPANAEAAQLHRENKK 135

Query: 453 EYEKRVKACVEQSF 494
           EY +RV+  VE S+
Sbjct: 136 EYVRRVRKTVEDSW 149


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score =  133 bits (322), Expect = 2e-32
 Identities = 56/123 (45%), Positives = 81/123 (65%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK 272
           L +DPP+  S  P  +++  W A I GP D+P+  G F L+I F  +YP KPP V F ++
Sbjct: 13  LGKDPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTR 72

Query: 273 MFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRR 452
           ++HPN+ ++G ICLDIL+++WSP   +S +L SI SLL+DPNP+ P     A +YK +R 
Sbjct: 73  IYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRS 132

Query: 453 EYE 461
            YE
Sbjct: 133 RYE 135


>SPCC1259.15c |ubc11|ubcdp, ubcp4|ubiquitin conjugating enzyme E2-C
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 176

 Score =  122 bits (294), Expect = 5e-29
 Identities = 55/118 (46%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
 Frame = +3

Query: 114 GVSGAP-TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV 290
           G+S  P +D+N++ W   I GP DT +E   FK+++ F   YP  PPT+ F S M+HPNV
Sbjct: 47  GISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNV 106

Query: 291 YADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEK 464
              G ICLDIL+++WS  Y+V  IL S+QSLL +PN  SP N+ AA+L+ ++  EY++
Sbjct: 107 DMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYKR 164


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score =  116 bits (279), Expect = 3e-27
 Identities = 49/118 (41%), Positives = 74/118 (62%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK 272
           L  DPP G+  APT++N+  +   + GP  + +E G F L +   +EYP  PP VRF++K
Sbjct: 14  LTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTK 73

Query: 273 MFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKEN 446
           ++HPNV   G ICL  L+  WSP   +  +L SIQ+L+  PNP+ P ++  A+++KEN
Sbjct: 74  IYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKEN 131


>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
           Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 167

 Score =  116 bits (279), Expect = 3e-27
 Identities = 57/147 (38%), Positives = 87/147 (59%), Gaps = 14/147 (9%)
 Frame = +3

Query: 93  LQEDPPTGVS-GAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVS 269
           +Q++PP G S G   D +I  W  +I GP DT +E G F  T+ F ++YP  PP ++F +
Sbjct: 17  IQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTT 76

Query: 270 KMFHPNVYADGGICLDILQ-------------NRWSPTYDVSAILTSIQSLLSDPNPNSP 410
           +++HPNV+ +G +C+ IL               RW P +    IL S+ S+LS PN  SP
Sbjct: 77  EIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESP 136

Query: 411 ANSMAAQLYKENRREYEKRVKACVEQS 491
           AN  AA+ ++EN +E++KRV+  V +S
Sbjct: 137 ANIDAAKEFRENPQEFKKRVRRLVRRS 163


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score =  113 bits (271), Expect = 3e-26
 Identities = 53/114 (46%), Positives = 70/114 (61%), Gaps = 2/114 (1%)
 Frame = +3

Query: 141 NIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDI 320
           ++M W   I G   T +E G +KLT+ F EEYP +PP  RF   +FHPNVY  G +CL I
Sbjct: 37  DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSI 96

Query: 321 L--QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKA 476
           L  +  W P   +  IL  IQ LL DPN  SPA + A  ++K+++ EYEKRV+A
Sbjct: 97  LNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRA 150


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score =  112 bits (270), Expect = 4e-26
 Identities = 54/141 (38%), Positives = 83/141 (58%), Gaps = 14/141 (9%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPT-DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVS 269
           L E+ P G++  P+ +++   W+ +I GP  TPFE G +  T++F  +YP  PPT++F  
Sbjct: 17  LTENGPDGITAGPSNEDDFFTWDCLIQGPDGTPFEGGLYPATLKFPSDYPLGPPTLKFEC 76

Query: 270 KMFHPNVYADGGICLDIL-------------QNRWSPTYDVSAILTSIQSLLSDPNPNSP 410
           + FHPNVY DG +C+ IL               RWSP   V  IL S+ S+L++PN  S 
Sbjct: 77  EFFHPNVYKDGTVCISILHAPGDDPNMYESSSERWSPVQSVEKILLSVMSMLAEPNDESG 136

Query: 411 ANSMAAQLYKENRREYEKRVK 473
           AN  A ++++E+R EY + V+
Sbjct: 137 ANIDACKMWREDREEYCRVVR 157


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score =  107 bits (256), Expect = 2e-24
 Identities = 47/128 (36%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK 272
           +Q+D   G+     +++I     +  GP  TP+E G F + IE   +YP +PP + F +K
Sbjct: 16  VQQDKQAGIQVWTINDDISHLKGMFRGPEGTPYEGGYFVVDIEIPIDYPFRPPKMNFDTK 75

Query: 273 MFHPNVYAD-GGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR 449
           ++HPNV +  G ICLDIL+++WSP Y + + L S+QSLL  P P++P ++  AQ+Y +N 
Sbjct: 76  IYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNY 135

Query: 450 REYEKRVK 473
           +++ +  +
Sbjct: 136 QQFVRTAR 143


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 97.1 bits (231), Expect = 2e-21
 Identities = 43/133 (32%), Positives = 76/133 (57%), Gaps = 1/133 (0%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSK 272
           L+E P   +     D+N+  W     GP D+ +  G F  +++F  +YP +PPT+ F ++
Sbjct: 19  LREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTR 78

Query: 273 MFHPNVYADGGICLDIL-QNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYKENR 449
           ++HPN  ++G +CL IL Q  + P+  + ++L  I  LL +PNP+ P  +  A+ Y+ +R
Sbjct: 79  IYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDR 138

Query: 450 REYEKRVKACVEQ 488
             ++K  +  VEQ
Sbjct: 139 PSFDKIARDYVEQ 151


>SPBC1198.09 |ubc16||ubiquitin conjugating enzyme
           Ubc16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 44/104 (42%), Positives = 67/104 (64%), Gaps = 1/104 (0%)
 Frame = +3

Query: 132 TDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGI 308
           TD ++  W AVI GP +TP+E G + L I   E YP  PP+V F +K+ HPN+ + +G +
Sbjct: 30  TDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEV 89

Query: 309 CLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSMAAQLYK 440
           C+DIL+  WSP + + +   +I SLLS+ + +SP N  AA+L +
Sbjct: 90  CMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLR 133


>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 2/115 (1%)
 Frame = +3

Query: 135 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNV-YADGGIC 311
           ++N+  +     GP +TP+  G +K+ +E   EYP K P++ FV+++FHPN+    G +C
Sbjct: 26  NDNMQEFYVRFHGPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVC 85

Query: 312 LDILQNRWSPTYDVSAIL-TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 473
           LD++   WSP +D+  I    +  LL  PN + P N  AA L       Y  +V+
Sbjct: 86  LDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVR 140


>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
           Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 83.8 bits (198), Expect = 2e-17
 Identities = 33/109 (30%), Positives = 64/109 (58%)
 Frame = +3

Query: 174 PHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGICLDILQNRWSPTYDV 353
           P +  ++ G FK  I+  + YP+ PP V+ ++K++HPN+  +G +CL+IL+  W+P  ++
Sbjct: 60  PDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNL 119

Query: 354 SAILTSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVKACVEQSFID 500
           ++IL  +Q L   PN   P N  AA    ++ + +  RV+  ++   ++
Sbjct: 120 NSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRTAMKGGLVN 168


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)
 Frame = +3

Query: 93  LQEDPPTGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFV-- 266
           LQ++P   V   P   NI+ W+ +I GP DTP+E G +  T+ F  +YP KPP +R +  
Sbjct: 17  LQKNPVELVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFPPDYPFKPPAIRMITP 76

Query: 267 SKMFHPNVYADGGICL---DILQNRWSPTYDVSAILTSIQSLLS 389
           S  F  N      +CL   D     W+P++ VS IL  + S ++
Sbjct: 77  SGRFQTNT----RLCLSFSDFHPKSWNPSWMVSTILVGLVSFMT 116


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
 Frame = +3

Query: 135 DNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGGIC- 311
           D  +  WNA I GP  +  E+  + L I     YP+ PP V FVS++  P V  + G   
Sbjct: 35  DITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVN 94

Query: 312 ---LDILQNRWSPTYDVSAILTSI-QSLLSDPNPNSP 410
              +D L++ W   Y +  +L  + + + S  N   P
Sbjct: 95  PHKIDCLRH-WKREYSMETVLLDLKKEMASSSNRKLP 130


>SPAC27E2.02 |||IMPACT homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 280

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 195 DGTFKLTIEFTEEYPNKPPTV 257
           D + +L I+F  +YPN  PTV
Sbjct: 38  DSSVRLNIQFPLDYPNSAPTV 58


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 306 ICLDILQNRWSPTYDVSAILTSIQSLLSD 392
           +CL +      P+++ SA  TS+  +LSD
Sbjct: 57  LCLSVFSKLQHPSFERSAFFTSVGLILSD 85


>SPBC30D10.14 |||dienelactone hydrolase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 1/99 (1%)
 Frame = +3

Query: 111 TGVSGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIE-FTEEYPNKPPTVRFVSKMFHPN 287
           T V G+ ++  ++I    IFG  D   ++G  KL  + FT   P+             P 
Sbjct: 33  TYVVGSTSNTRVLIGFMDIFGLSDQ-IKEGADKLADDGFTVYLPDFLEGKPLPVTALPPK 91

Query: 288 VYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPN 404
              D  +C D    R SP      +   ++++ ++  PN
Sbjct: 92  TPEDQKLCNDFFSTRISPNLHWPKLAKVVEAVRANHGPN 130


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 567 YTCIHWNESVNCKFYYLHTCLDIFSQN 647
           + C+ W E V   + +++TC+++  +N
Sbjct: 522 FKCMDWAEKVRLLWEFVNTCINVLYKN 548


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 331 LFCRISRQIPPSA*TFG*NIFDTNRTVGGLFGYSSVNS 218
           LF R   ++ P++       FD + T+GG+ G +S+++
Sbjct: 396 LFVRNGARLGPTSIYHAWKAFDVDSTIGGMCGKTSIDT 433


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -3

Query: 268 DTNRTVGGLFGYSSVNSIVSL 206
           D+  +VG +FG+SSV + VSL
Sbjct: 134 DSGNSVGEIFGHSSVVNAVSL 154


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = -3

Query: 139 LSVGAPDTPVGGSSCKTYCYPALRSSLDVPEYTCGLISSVSNW 11
           ++V  P   V   +CK   Y  +   LDVP Y      +  NW
Sbjct: 216 VTVKTPWLSVLPFNCKKNHYSVITLDLDVPNYETNRFETHCNW 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,927
Number of Sequences: 5004
Number of extensions: 66668
Number of successful extensions: 196
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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