Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23o01
(711 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L10433-1|AAA27732.1| 149|Apis mellifera transposase protein. 24 1.2
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 24 1.6
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 23 3.8
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 23 3.8
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 23 3.8
DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein ... 22 5.0
AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein ... 22 5.0
AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein. 22 5.0
DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor pr... 21 8.7
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 21 8.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 8.7
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 21 8.7
>L10433-1|AAA27732.1| 149|Apis mellifera transposase protein.
Length = 149
Score = 24.2 bits (50), Expect = 1.2
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 293 RRWWNLPRYPAK 328
+RWW+ PR PA+
Sbjct: 43 KRWWSRPREPAQ 54
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 23.8 bits (49), Expect = 1.6
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +3
Query: 366 TSIQSLLSDPNPNSPANSMAAQLYKENRREYEKRVK 473
T+I L++ P P + ANS A +LY + Y + ++
Sbjct: 3 TAISCLVA-PFPGASANSEAKRLYDDLLSNYNRLIR 37
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 22.6 bits (46), Expect = 3.8
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = +1
Query: 607 FITCILVWTFSVKI 648
F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 22.6 bits (46), Expect = 3.8
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +1
Query: 22 RMRLGHTCIPAHLATIG 72
++ + HTCI HL +G
Sbjct: 92 KLHVSHTCIENHLKQLG 108
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 22.6 bits (46), Expect = 3.8
Identities = 5/14 (35%), Positives = 10/14 (71%)
Frame = +1
Query: 607 FITCILVWTFSVKI 648
F+TCI +W + + +
Sbjct: 220 FVTCIFIWAYVIPL 233
>DQ855482-1|ABH88169.1| 116|Apis mellifera chemosensory protein 1
protein.
Length = 116
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 598 IVNFITCILVWTFSVKIYS 654
IV I +L WT++ ++YS
Sbjct: 6 IVILILSLLTWTYAEELYS 24
>AJ973399-1|CAJ01446.1| 116|Apis mellifera hypothetical protein
protein.
Length = 116
Score = 22.2 bits (45), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 598 IVNFITCILVWTFSVKIYS 654
IV I +L WT++ ++YS
Sbjct: 6 IVILILSLLTWTYAEELYS 24
>AF134816-1|AAD40232.1| 50|Apis mellifera unknown protein.
Length = 50
Score = 22.2 bits (45), Expect = 5.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 152 DHNIVISWSS*HTCRWIL 99
DHN I WS H C +L
Sbjct: 33 DHNGSIYWSMYHLCTVVL 50
>DQ869053-1|ABJ09600.1| 459|Apis mellifera capa-like receptor
protein.
Length = 459
Score = 21.4 bits (43), Expect = 8.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = +1
Query: 604 NFITCILVW 630
N ITCI++W
Sbjct: 51 NIITCIVIW 59
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 21.4 bits (43), Expect = 8.7
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 262 NRTVGGLFGYSSVNSIVS 209
NR +GG+ GY+ + +++S
Sbjct: 415 NRFLGGIGGYNGLPTVMS 432
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -3
Query: 670 TKTFICYKF*LKMSKQVCK**NLQFTLS 587
TKTF C + + + K++ K N ++L+
Sbjct: 454 TKTFCCKGYCMDLLKELSKTINFTYSLA 481
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 21.4 bits (43), Expect = 8.7
Identities = 7/20 (35%), Positives = 12/20 (60%)
Frame = -1
Query: 444 SPCKAVRPSNLLESLGWDHL 385
+P +PS +++ LGW L
Sbjct: 370 NPILKAKPSEVVQILGWKEL 389
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,254
Number of Sequences: 438
Number of extensions: 4543
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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