Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23n14
         (199 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    19   4.3  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    19   4.3  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    19   4.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    19   5.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    18   9.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    18   9.9  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 150 YCHPTFLINIDLN 112
           Y HP+   ++DLN
Sbjct: 138 YVHPSATFSLDLN 150


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 191 LVCIIFCVSFRLSSTAI 141
           L+C+I+C      + AI
Sbjct: 8   LLCVIYCALVHADTVAI 24


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 191 LVCIIFCVSFRLSSTAI 141
           L+C+I+C      + AI
Sbjct: 8   LLCVIYCALVHADTVAI 24


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 39 KTTIAVRYFYQTYLI 83
          +T +   YF+ TY+I
Sbjct: 32 RTKLQPTYFHHTYII 46


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic
          acetylcholine receptor alpha6subunit protein.
          Length = 529

 Score = 19.0 bits (37), Expect = 5.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +3

Query: 39 KTTIAVRYFYQTYLI 83
          +T +   YF+ TY+I
Sbjct: 32 RTKLQPTYFHHTYII 46


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 63  FYQTYLIPITF 95
           FY+ YL+ ++F
Sbjct: 370 FYKNYLLNVSF 380


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = +3

Query: 63  FYQTYLIPITF 95
           FY+ YL+ ++F
Sbjct: 460 FYKNYLLNVSF 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,427
Number of Sequences: 438
Number of extensions: 448
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 44
effective length of database: 127,071
effective search space used:  2668491
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)