Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m23
         (577 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058602-1|AAL13831.1| 1257|Drosophila melanogaster LD29335p pro...    29   6.0  
AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA...    29   6.0  
AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB...    29   6.0  

>AY058602-1|AAL13831.1| 1257|Drosophila melanogaster LD29335p protein.
          Length = 1257

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 469  NINVSSCKSNTGAPKSIIPIKKQKLTPRRNTNDLR 365
            N+N  S +S      S+IP K+Q  +PR N+  ++
Sbjct: 943  NVNTLSVRSMPACQVSVIPKKRQAASPRLNSKRMK 977


>AE013599-965|AAF58877.2| 1877|Drosophila melanogaster CG30007-PA,
            isoform A protein.
          Length = 1877

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 469  NINVSSCKSNTGAPKSIIPIKKQKLTPRRNTNDLR 365
            N+N  S +S      S+IP K+Q  +PR N+  ++
Sbjct: 1563 NVNTLSVRSMPACQVSVIPKKRQAASPRLNSKRMK 1597


>AE013599-964|AAF58876.2| 1693|Drosophila melanogaster CG30007-PB,
            isoform B protein.
          Length = 1693

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 469  NINVSSCKSNTGAPKSIIPIKKQKLTPRRNTNDLR 365
            N+N  S +S      S+IP K+Q  +PR N+  ++
Sbjct: 1564 NVNTLSVRSMPACQVSVIPKKRQAASPRLNSKRMK 1598


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,701,348
Number of Sequences: 53049
Number of extensions: 437731
Number of successful extensions: 756
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)