Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23m23
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain (p...    29   2.4  
U97017-4|AAB52358.1|  156|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>U29488-10|AAK93843.1|  813|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 8 protein.
          Length = 813

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 128 YPIRITSNNNIKPYYMYLLA*YCD-CY 205
           Y  +I   +N KPY +Y+ + YC  CY
Sbjct: 131 YQFKILEESNTKPYIVYIYSNYCQMCY 157


>U97017-4|AAB52358.1|  156|Caenorhabditis elegans Hypothetical
           protein F47B3.3 protein.
          Length = 156

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 168 ITCIYLPSIVTVISYRGSLYYVGKG-SSFYILVLIFIAELLKSFYL 302
           I CI L  +  +    G  YY G G ++F   V IF+   L + YL
Sbjct: 3   IVCIVLCLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYL 48


>U97013-2|AAV58868.1|  190|Caenorhabditis elegans Hypothetical
           protein F28H1.4b protein.
          Length = 190

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 168 ITCIYLPSIVTVISYRGSLYYVGKG-SSFYILVLIFIAELLKSFYL 302
           I CI L  +  +    G  YY G G ++F   V IF+   L + YL
Sbjct: 48  IVCIVLCLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYL 93


>U97013-1|AAB52340.2|  270|Caenorhabditis elegans Hypothetical
           protein F28H1.4a protein.
          Length = 270

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 168 ITCIYLPSIVTVISYRGSLYYVGKG-SSFYILVLIFIAELLKSFYL 302
           I CI L  +  +    G  YY G G ++F   V IF+   L + YL
Sbjct: 128 IVCIVLCLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYL 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,688,950
Number of Sequences: 27780
Number of extensions: 245667
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)