Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23m18
(579 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0686 + 19457832-19457870,19458021-19458107,19459311-194593... 165 3e-41
08_02_1399 + 26771106-26771171,26772004-26772111,26772218-267722... 163 9e-41
03_05_0477 + 24707460-24707553,24707644-24707711,24707857-247079... 99 2e-21
12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812 98 5e-21
07_01_0503 - 3751028-3751063,3751145-3751231,3751333-3751410,375... 47 9e-06
12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150 29 2.7
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645 28 4.7
11_06_0618 + 25565780-25566064,25566855-25567046,25567144-255674... 28 6.2
04_04_0650 + 26950912-26951397,26951552-26951728 28 6.2
09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254 27 8.2
>09_04_0686 +
19457832-19457870,19458021-19458107,19459311-19459391,
19459463-19459489,19459589-19459651,19459768-19459854,
19460290-19460415,19460827-19460960,19461037-19461109,
19461307-19461372,19461778-19461816,19461927-19462051,
19462131-19462245,19463109-19463141,19463525-19463593
Length = 387
Score = 165 bits (400), Expect = 3e-41
Identities = 84/152 (55%), Positives = 105/152 (69%), Gaps = 5/152 (3%)
Frame = +2
Query: 119 LKSSPAVLGMLTRLSRRSFATSKAL-----ASKPVTVRDALNQAIDEEMERDEKVFVLGE 283
L S P + +L RL + A + A A+K +TVR+ALN A+DEEM D VF++GE
Sbjct: 9 LGSGPMLGQVLRRLRPATAAAADAARAYSAAAKEMTVREALNSALDEEMSADPSVFLMGE 68
Query: 284 EVAQYDGAYKVTRGLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQ 463
EV +Y GAYK+++GL KYG +RV+DTPITE L+P+ EFMTFNFSMQ
Sbjct: 69 EVGEYQGAYKISKGLLDKYGPERVLDTPITEAGFTGIAVGAAYQGLRPVVEFMTFNFSMQ 128
Query: 464 AIDHIINSAAKTFYMSAGTVPVPIVFRGPNGS 559
AIDHIINSAAK+ YMSAG + VPIVFRGPNG+
Sbjct: 129 AIDHIINSAAKSNYMSAGQISVPIVFRGPNGA 160
>08_02_1399 +
26771106-26771171,26772004-26772111,26772218-26772280,
26772382-26772468,26772931-26773056,26773418-26773551,
26773627-26773699,26773819-26773884,26774358-26774391,
26774904-26774953,26775067-26775191,26775278-26775392,
26775617-26775685
Length = 371
Score = 163 bits (396), Expect = 9e-41
Identities = 77/128 (60%), Positives = 95/128 (74%)
Frame = +2
Query: 176 ATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRV 355
A + + A+K +TVR+ALN A+DEEM D VF++GEEV +Y GAYK+++GL KYG RV
Sbjct: 13 ARTYSAAAKEMTVREALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDKYGPDRV 72
Query: 356 IDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYMSAGTVPVPI 535
+DTPITE L+P+ EFMTFNFSMQAIDHIINSAAK+ YMSAG + VPI
Sbjct: 73 LDTPITEAGFTGIGVGAAYQGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPI 132
Query: 536 VFRGPNGS 559
VFRGPNG+
Sbjct: 133 VFRGPNGA 140
>03_05_0477 +
24707460-24707553,24707644-24707711,24707857-24707903,
24709188-24710160
Length = 393
Score = 99.1 bits (236), Expect = 2e-21
Identities = 51/138 (36%), Positives = 72/138 (52%)
Frame = +2
Query: 143 GMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTR 322
G +++ + A S V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+
Sbjct: 52 GRMSKAESPASAASSKSDGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTK 111
Query: 323 GLWKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTF 502
GL + +GD RV+DTPI E L+P+ E M F + A + I N+
Sbjct: 112 GLAEMFGDLRVLDTPIAENSFTGMGVGAAMKGLRPVVEGMNMGFLLLAYNQISNNCGMLH 171
Query: 503 YMSAGTVPVPIVFRGPNG 556
Y S G +PIV RGP G
Sbjct: 172 YTSGGQFKIPIVIRGPGG 189
>12_02_1121 + 26233881-26234000,26234138-26234175,26235840-26236812
Length = 376
Score = 97.9 bits (233), Expect = 5e-21
Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Frame = +2
Query: 161 SRRSFATSKALASKP----VTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGL 328
+RRS + SK V + +AL +A+ EEM+ D V V GE+V Y G+YKVT+GL
Sbjct: 37 ARRSASADATAESKSGGHEVLLFEALREALIEEMKEDPTVCVFGEDVGHYGGSYKVTKGL 96
Query: 329 WKKYGDKRVIDTPITEXXXXXXXXXXXXXXLKPICEFMTFNFSMQAIDHIINSAAKTFYM 508
+ +GD RV+DTPI E L+PI E M F + A + I N+ Y
Sbjct: 97 AEMFGDLRVLDTPIAENSFAGMGVGAAMKGLRPIVEGMNMGFLLLAYNQISNNCGMLHYT 156
Query: 509 SAGTVPVPIVFRGPNG 556
S G +PIV RGP G
Sbjct: 157 SGGQFKIPIVIRGPGG 172
>07_01_0503 -
3751028-3751063,3751145-3751231,3751333-3751410,
3751488-3751583,3752124-3752210,3752289-3752357,
3752511-3752600,3752601-3752720,3752907-3753004,
3753084-3753193,3753463-3753533,3753679-3753714,
3753862-3753973,3754495-3754700
Length = 431
Score = 47.2 bits (107), Expect = 9e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Frame = +2
Query: 194 ASKPVTVRDALNQAIDEEMERDEKVFVLGEEVAQYDGAYKVTRGLWKKYGDKRVIDTPIT 373
A K V + A+NQA+ ++ D + +V GE+V + G ++ T GL ++G RV +TP+
Sbjct: 46 AGKEVNLFTAINQALHIALDTDPRSYVFGEDVG-FGGVFRCTTGLADRFGRNRVFNTPLC 104
Query: 374 E 376
E
Sbjct: 105 E 105
>12_02_0344 - 17765602-17765634,17765703-17765765,17766073-17766150
Length = 57
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 220 CFKSSDRRGDGERRESLRFGRGSRSIRWCLQ 312
C K +RG G+R ESL + R + W +Q
Sbjct: 10 CAKGGHKRGLGDREESLAYTRRFLLVSWLMQ 40
>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
Length = 375
Score = 28.3 bits (60), Expect = 4.7
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 113 MALKSSPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEMERDEK 265
M + PA+ L ++RRS K+LA K + R+ N + D+K
Sbjct: 177 MPHRKDPALPNTLNDINRRSQEIGKSLARKKLATREQKNPTSPDITNNDQK 227
>11_06_0618 +
25565780-25566064,25566855-25567046,25567144-25567416,
25567636-25567738,25568273-25568391,25568615-25568782,
25568908-25569386,25569742-25569850,25569905-25570070,
25571405-25571433
Length = 640
Score = 27.9 bits (59), Expect = 6.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 214 KRCFKSSDRRGDGERRESLRFGRGSRSIRW 303
KR F+ + RG ++ L FGRGSR W
Sbjct: 551 KRFFREHNMRGS-HNKDVLTFGRGSRENTW 579
>04_04_0650 + 26950912-26951397,26951552-26951728
Length = 220
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 128 SPAVLGMLTRLSRRSFATSKALASKPVTVRDALNQAIDEEME 253
SPA L + RL R ++ +++ PV +D Q +EE E
Sbjct: 10 SPAKLSLERRLPRATWTARRSVRFPPVRAQDQQQQVKEEEEE 51
>09_06_0186 + 21427739-21428813,21428894-21428977,21429136-21429254
Length = 425
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = -1
Query: 459 IEKLKVMNSQIGLSPAKAAPTAIPANPASV 370
++K+KV+N LSP A P +P PASV
Sbjct: 390 LQKMKVLNVLNKLSPTDALP--LPTQPASV 417
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,852
Number of Sequences: 37544
Number of extensions: 294789
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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