Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23m08
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 30 1.2
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266... 30 1.2
01_06_0808 + 32134765-32136570 29 2.8
01_06_1224 - 35508842-35510404 28 5.0
06_03_0615 - 22761375-22761760,22762218-22765026 27 8.7
05_07_0209 + 28420008-28421510 27 8.7
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 27 8.7
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 125 SNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHY 235
S ++F VALP S+S KI SAR H N +I +
Sbjct: 1166 SAKMFLPVALPRGSRSRAAAKIKSARLEHENTRMISF 1202
>02_01_0372 +
2668597-2668671,2669021-2669126,2669279-2669334,
2669830-2669907,2669993-2670066,2670147-2670280,
2670377-2670472,2670703-2670854
Length = 256
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Frame = +2
Query: 212 TNEEIIHYYPRHMETHKL---MMNLRDYGLFRDEHQDFKEEMKRLREL 346
TNE +I +E HK M+N R + D HQ +K E++ L+++
Sbjct: 138 TNEAVIKQLNLELEAHKAHIDMLNSRLEQVTADVHQQYKNEIQDLKDV 185
>01_06_0808 + 32134765-32136570
Length = 601
Score = 28.7 bits (61), Expect = 2.8
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 8/92 (8%)
Frame = +2
Query: 50 MATNYTKYAQLINTST--------TYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARP 205
++TN+TK + LI Y KRLSN +FGE++ T + + S
Sbjct: 216 LSTNWTKLSSLIKRWNRAMKVFVQVYLTSEKRLSNHVFGELSESTADLCFYEISLSSVMQ 275
Query: 206 LHTNEEIIHYYPRHMETHKLMMNLRDYGLFRD 301
L T E + P E KL L Y + D
Sbjct: 276 LLTFYESVAIGPPKPE--KLFRLLDMYEVLND 305
>01_06_1224 - 35508842-35510404
Length = 520
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 293 FRDEHQDFKEEMKRLRELRGKVKVWRRLLD 382
FR + + +RL E G + WRRLLD
Sbjct: 282 FRQQFHHLRPISRRLGEAHGLLSSWRRLLD 311
>06_03_0615 - 22761375-22761760,22762218-22765026
Length = 1064
Score = 27.1 bits (57), Expect = 8.7
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = -1
Query: 395 LPPSYQATASKP*LYLGVLAISSSPP*SLDAHHGIDHNLLNSS 267
+PP+Y + A+ L L A+ P SL A G+ + LLNS+
Sbjct: 111 IPPAYASLAALRVLDLSSNALYGDIPASLGALSGLQYLLLNSN 153
>05_07_0209 + 28420008-28421510
Length = 500
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 6 NECQIIDRLLVEGKQWPQIIQ 68
N +ID L +G QWP +IQ
Sbjct: 183 NSVHVIDFALTDGIQWPSLIQ 203
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 215 NEEIIHYYPRHMETHKLMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 361
+E+I++ Y +M HKLMM + RD+ ++ KE+ G ++
Sbjct: 379 DEDIVYMYTGYM--HKLMMCFLSHPTSRDKIKEIKEKTMNALSPYGSIR 425
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,537,418
Number of Sequences: 37544
Number of extensions: 244327
Number of successful extensions: 523
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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