Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23m08
(506 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal... 109 5e-24
AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein. 109 5e-24
AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein. 109 5e-24
BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein. 107 2e-23
>BC015462-1|AAH15462.1| 106|Homo sapiens mitochondrial ribosomal
protein S33 protein.
Length = 106
Score = 109 bits (262), Expect = 5e-24
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2
Query: 83 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 262
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 263 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 361
LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AF151897-1|AAD34134.1| 106|Homo sapiens CGI-139 protein protein.
Length = 106
Score = 109 bits (262), Expect = 5e-24
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2
Query: 83 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 262
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 263 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 361
LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>AC006006-2|AAD43190.1| 106|Homo sapiens unknown protein.
Length = 106
Score = 109 bits (262), Expect = 5e-24
Identities = 53/93 (56%), Positives = 66/93 (70%)
Frame = +2
Query: 83 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 262
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 263 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 361
LM LR GL+RDEHQDF +E KRL++LRGK K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGKEK 93
>BC105793-1|AAI05794.1| 112|Homo sapiens MRPS33 protein protein.
Length = 112
Score = 107 bits (258), Expect = 2e-23
Identities = 52/93 (55%), Positives = 66/93 (70%)
Frame = +2
Query: 83 INTSTTYARRMKRLSNRIFGEVALPTNSKSMKVVKIFSARPLHTNEEIIHYYPRHMETHK 262
+++ + YA RM RLS R+FGEV PTNSKSMKVVK+FS PL +E +YP H +
Sbjct: 1 MSSLSEYAFRMSRLSARLFGEVTRPTNSKSMKVVKLFSELPLAKKKETYDWYPNHHTYAE 60
Query: 263 LMMNLRDYGLFRDEHQDFKEEMKRLRELRGKVK 361
LM LR GL+RDEHQDF +E KRL++LRG+ K
Sbjct: 61 LMQTLRFLGLYRDEHQDFMDEQKRLKKLRGEEK 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,454,223
Number of Sequences: 237096
Number of extensions: 1326856
Number of successful extensions: 2458
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2452
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4706589866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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